Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30552
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    27   1.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   2.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   3.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   3.0  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.0  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   7.0  

>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 475 SCWSLFGISGQXSKPSCIPSW 413
           SCW+ FG +G+ S  + +PS+
Sbjct: 19  SCWTRFGYAGEESPMTILPSY 39


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -3

Query: 490 SSRSTSCWSLFGISGQXSKPSCIPSWSRSISLSHASPTLSLSVSS 356
           SS STS  +L   S   S+P+   S S S+S SH S + S S S+
Sbjct: 374 SSSSTSSSTLTSSSSSSSRPASSSSHSSSLS-SHKSSSSSKSSSA 417


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
 Frame = -3

Query: 529 PISVVVVXQTSPLSSRSTSCWSLFGISGQXSKPSCIPSWSRSISLSHASPTL-SLSVSSW 353
           P  V V+  TSP S    +  S     G+  KP    S S S+  S    +L SL  +  
Sbjct: 232 PTPVKVLNTTSPKSENPLNQSSFLSFLGENLKPK-FTSRSSSVYASPIKSSLNSLECNPS 290

Query: 352 FVLRTRGQLSQTSPTPXESMSSCCGLYFLGQLSLGS 245
            +L  R    Q+S +  +S  S   L  L  LS G+
Sbjct: 291 NLLSVRKNFQQSSDSYLKSNKSFDQLNNLVGLSTGN 326


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 124 SDERGNACDNCPRHYN 171
           SD++ N CDN   HYN
Sbjct: 817 SDQQRNECDNYSNHYN 832


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 124 SDERGNACDNCPRHYN 171
           SD++ N CDN   HYN
Sbjct: 817 SDQQRNECDNYSNHYN 832


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 112 DENKSDERGNACDNCPRHY 168
           D ++S   GNAC NC +H+
Sbjct: 87  DMDQSPRPGNACINCRKHH 105


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 397 LSHASPTLSLSVSSWFVLRTRGQLSQTSPTPXES 296
           +SH    +S S +S F+ +    L+  +PTP  S
Sbjct: 453 MSHGDEAVSSSSASRFMSKVSSNLNSGNPTPYNS 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.135    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,247,977
Number of Sequences: 5004
Number of extensions: 19691
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)