Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30552
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64842-10|AAB37080.1|  402|Caenorhabditis elegans Hypothetical p...    31   0.68 
U00065-4|AAA50736.1|  103|Caenorhabditis elegans Hypothetical pr...    30   0.90 
Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U64842-10|AAB37080.1|  402|Caenorhabditis elegans Hypothetical
           protein F25B4.1 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 249 PSDNCPRKYNPQQDDMDSXGVGDVCDNCP 335
           P+  CPR + P  D +D   +G V   CP
Sbjct: 323 PAGRCPRSHLPLIDPLDKCSIGFVTSGCP 351


>U00065-4|AAA50736.1|  103|Caenorhabditis elegans Hypothetical
           protein D1044.4 protein.
          Length = 103

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 300 SXGVGDVCDNCPRVRNTNQEDTDKD 374
           S  V D C++CP+ RN N E  D+D
Sbjct: 40  SEQVADPCNHCPKPRNYNSECKDED 64


>Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.2 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 112 RRPTGPGWGSTXSCQENWESRLRLHQNRTSPRCRH 8
           RR   P W     C+ NW+        +  P+CRH
Sbjct: 32  RRSMTP-WSFFGDCKHNWDCYKESSNRQRLPKCRH 65


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +3

Query: 243 TEPSDNCPRKYNPQQDDM-DSXGVGDVCDNCPRVRNTNQEDTDKDN 377
           T PS  CP  YN Q  +M         C  C  V+   +E+  K N
Sbjct: 84  TSPSQWCPESYNSQLREMLGGKTTCKFCSLCENVKENVKENESKLN 129


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 505 QTSPLSSRSTSCWSLF-GISGQXSKPSCIPSWSRSISLS-HASP 380
           +  P++S S      F GI GQ  +   + SWS  +SLS H+ P
Sbjct: 422 EKQPINSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSGP 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.135    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,252,768
Number of Sequences: 27780
Number of extensions: 124886
Number of successful extensions: 315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)