Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30550
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    29   0.61 
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    27   3.2  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    27   4.3  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    26   5.7  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   5.7  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    26   7.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   7.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   9.9  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 477 NEW*PELWKGNGLPHEIAMQQFVSQFCALRICIVPIR 367
           N+W   L+ G+G  HEI +Q+F + +       VP+R
Sbjct: 777 NDWKSSLFSGSGFYHEIRLQRFDNVYRYFICRAVPLR 813


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 279 PRALRSFTIDAFDGYTHHPPGVKWLANRVRNEKKSLYISVLSASFLMF 136
           P+ +R+   DA  G+ HH P       R    ++++  SVL A F+ F
Sbjct: 225 PQLIRNKIDDAVIGFYHHHPFPSSEIARCFPRRRAILRSVLGADFIGF 272


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 468 TIRSMTVNRAEHIIKLGRDIDNKNECAC*GDTGKRNKESIRKYCNASWEFVDFYDAASH 644
           TI  + +N   H    G  I NK      G +  R    I   C A+W+ +  YD+  H
Sbjct: 217 TILGLKLN-GRHPSDNGEKIRNKKVIIIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGH 274


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 339 SIYKDLYYII*GALIDYLTQPRALRSFTIDAFDGYTHH 226
           ++YK +  +I   +I +L +P  L  F  DA++  +HH
Sbjct: 245 NLYKQVLNVIHKRVIPFLQKPNLLMDFLTDAYN--SHH 280


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 640 RIAVLSTSPKPCRARARDSQTFVYFIKAASFS 735
           RIA L T   P R+   D    +YF K +SF+
Sbjct: 63  RIASLRTIKHPVRSEVIDKALMLYFKKPSSFT 94


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 571 LFPVSPQQAHSFLLSMSRPSLIICSAR 491
           L PV+ QQA S  LSM+ P  + CSA+
Sbjct: 147 LTPVTYQQAQSVALSMNAP-YVECSAK 172


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 597 CNASWEFVDFYDAASHRSFVYK 662
           C  SW ++D +D AS    VY+
Sbjct: 550 CQDSWNYLDHFDIASAHRNVYR 571


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 180  KSLYISVLSASFLMFSIA*KLSQTCMELEHLPTFAARGAVP 58
            +SL  +VL   FL+ S++  +   C  ++HLP       VP
Sbjct: 1289 RSLSKAVLDNFFLLSSLSDNVRCRCCGIKHLPAHCPLSIVP 1329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,287,062
Number of Sequences: 5004
Number of extensions: 66318
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)