Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30547
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0034 - 27200513-27200605,27200750-27200802,27201724-272017...    29   3.7  
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799...    28   6.4  
04_03_0904 + 20717005-20718087                                         28   6.4  
01_01_0840 - 6557931-6558377                                           28   6.4  

>05_07_0034 -
           27200513-27200605,27200750-27200802,27201724-27201797,
           27202762-27202830,27203070-27204148
          Length = 455

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 450 QPSPHTPPTLHPQLRRTPRL 509
           +P P  PPTL P+L R PR+
Sbjct: 334 EPEPPPPPTLPPRLLRLPRM 353


>06_02_0364 +
           15178583-15178881,15179652-15179723,15179853-15179917,
           15180890-15180934,15182493-15183170,15183376-15183410,
           15183647-15183736,15183896-15183985,15184164-15184262,
           15184938-15185013,15185473-15185588
          Length = 554

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 456 SPHTPPTLHPQLRRTPRLCR*GDRSRCSLRCTC 554
           +P  PP L P  RR P   R G R R    C+C
Sbjct: 10  TPRPPPPLVPAHRRRPLASRSGLRRREGCPCSC 42


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 453 PSPHTPPTLHPQLRRTP 503
           P+P+TPPT  PQ + TP
Sbjct: 269 PTPYTPPTYKPQPKPTP 285


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 210 RRQRCGHRERCEL 172
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,371,147
Number of Sequences: 37544
Number of extensions: 221692
Number of successful extensions: 856
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)