Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30547
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.94 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.94 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 400 NRSWITIFRDILCSRCSSHRRILRPRYTRS 489
           NR +   FR+IL  RCS+   ++R  + +S
Sbjct: 431 NRDFRKPFREILYFRCSNLNHMMREEFYQS 460


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 393 RPQPLMDHHLSRHTLLTVLQPSPHTPPTLHPQLRRT 500
           RP P     + RH ++T++    H   TL   LR T
Sbjct: 133 RPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNT 168


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 449 EHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQP 342
           +H E+    + VI ER++ S+  L   +  +  S+P
Sbjct: 28  KHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRP 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,865
Number of Sequences: 438
Number of extensions: 2269
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)