Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30545
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.9  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   3.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   3.9  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   3.9  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   3.9  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   3.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 185 TLITNPEYSSKYLR 226
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -3

Query: 210 EYSGLVIRVGXECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTVQ 31
           E+ G+   +G   ++L SG+    LD  GH  ++ ++   +G +I    +L +     V+
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGH--AAFISMRHRGAHITDIVVLVVAADDGVK 231

Query: 30  DSSLDS 13
           + +L S
Sbjct: 232 EQTLQS 237


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 398 HYQRQRSSLQGRDRAY 445
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 398 HYQRQRSSLQGRDRAY 445
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 398 HYQRQRSSLQGRDRAY 445
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 398 HYQRQRSSLQGRDRAY 445
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 398 HYQRQRSSLQGRDRAY 445
           HY R+RS  + R+R Y
Sbjct: 219 HYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 398 HYQRQRSSLQGRDRAY 445
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 338 QRYPQRFRYREVHQ-QGEQDHHYQRQRSSLQGRDR 439
           +RY  R R RE +  + E+++   R+RS  + RDR
Sbjct: 270 KRY-SRSREREQNSYKNEREYRKYRERSKERSRDR 303


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 219 YLDEYSGLVIRVGXECLSLFSGDGSVTLDECG 124
           Y D  + L +     C S  +  G V+  ECG
Sbjct: 143 YYDGGANLNLNGTVNCTSSIASSGVVSAGECG 174


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 301 PRGAGGIPVS 272
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,190
Number of Sequences: 438
Number of extensions: 2935
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)