Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30544
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   1.8  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   4.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    24   7.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    24   7.3  

>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 258 LGQGCPNHCFILVSLV-WTYNKNTYVQIQIKF 350
           LG  C N   I  S+  W Y  + ++Q+++KF
Sbjct: 515 LGNSCFNRARIAHSIYHWEYKVSRHIQVELKF 546


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 240 CRLLENLGQGCPNHCFI 290
           CR  +NLGQ   NHC +
Sbjct: 893 CRSNDNLGQNNDNHCVL 909


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 321 NTYVQIQIKFNSQN 362
           NTYVQ +I+F+S+N
Sbjct: 140 NTYVQDEIRFSSRN 153


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 387 FFFXLHQIYSVN*TLSVFEHMYFYYKS 307
           FF   H +  ++   S FE M+ YYK+
Sbjct: 212 FFMNDHFLVHIHHPASFFEKMHMYYKT 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,526
Number of Sequences: 5004
Number of extensions: 18672
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)