Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30544
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0061 + 10527159-10527866                                         27   4.1  
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    27   7.1  

>04_03_0061 + 10527159-10527866
          Length = 235

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 10  KRGFIKFNKAQSNCGYVIIEEK 75
           KRGF+K ++ Q  C  +++E+K
Sbjct: 157 KRGFVKADRFQIRCDVIVLEKK 178


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 291 LVSLVWTYNKNTYVQIQIKFNSQNIFD 371
           L+SL W Y K  ++ + +K    N+FD
Sbjct: 404 LLSLGWGYLKGMHLTVDLKVEVHNLFD 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,753,808
Number of Sequences: 37544
Number of extensions: 88948
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)