Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30538
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.1  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.4  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   7.8  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 203 GGSFASYSRNSYSRIGVQDRDQFAGLVREVAAPDVGRMGIEILSFT 340
           G  + S  +N Y  IGV+    ++ L    A  D G    ++ ++T
Sbjct: 11  GAPYPSTDQNPYPSIGVESSAFYSPLSNPYALKDAGGTAADMSAWT 56


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 413 TLTSVSLWLTEMLVLGKRNVRKTQWTSNI 499
           T++ VS W     +  K+N+ K Q  +N+
Sbjct: 273 TVSQVSNWFGNKRIRYKKNIGKAQEEANL 301


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 521 VFYFVSIEYLTSIAFFSHSASLIPA 447
           +FY+     L S+A       L+PA
Sbjct: 216 IFYYKDTAQLVSLALLMQLTQLVPA 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,868
Number of Sequences: 336
Number of extensions: 3493
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)