Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30538
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    34   0.024
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    29   0.68 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    26   6.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   8.4  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   8.4  

>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -3

Query: 163 LPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITSRDI 14
           L R  S +   SSSS    H + P T S +P + ST S  G +VIT+ D+
Sbjct: 48  LYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDV 97


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 98  RPVQDHERRRTSHNCLRAVPGQDRQRD-*DDCPANVGGSFASYSRN 232
           +PV +H+ ++TS      VPG  R +D   DCP++    F   S N
Sbjct: 218 QPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHLASSN 263



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 233 SSENSSQMTLQRLQDSHLNLFDG 165
           S++NSS  + Q + DS++N+F G
Sbjct: 137 SNQNSSLKSFQSVPDSNVNVFGG 159


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 376 QLGEVADANVKRDADIGVALANRDAGIREAECEKNAMDVKYSMDTK 513
           Q GEV D  V RD+  G +        +  +C    M  ++ +D K
Sbjct: 185 QFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGK 230


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 436 PERHRCQRPSSRWRLRLPQAGQILDIVVDVLNREGQNLDSHSSDVRRSHFAYQARELVPV 257
           P+     R +   R R P A  +   ++ +  REG  L   + D          R+++ +
Sbjct: 524 PKLRPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINL 583

Query: 256 LYTY 245
           L TY
Sbjct: 584 LSTY 587


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 345 LIVKDRISIPILPTS 301
           LIV DR+ +PILPT+
Sbjct: 37  LIVIDRVELPILPTT 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,146
Number of Sequences: 5004
Number of extensions: 57896
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)