Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30538
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)             133   1e-31
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)                   58   1e-08
SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4)                     30   2.2  
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    28   9.0  
SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score =  133 bits (322), Expect = 1e-31
 Identities = 65/85 (76%), Positives = 72/85 (84%)
 Frame = +3

Query: 3   DVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIK 182
           DVQ ISLEVMTLNP CE VETAQGV +TVTGVAQ K+M E  LL TACEQFLGKT ++I+
Sbjct: 324 DVQSISLEVMTLNPTCEAVETAQGVAVTVTGVAQVKVMTEPRLLKTACEQFLGKTTRQIE 383

Query: 183 MTVLQTLEGHLRAILGTLTVE*VYK 257
             VLQTLEGHLRAILGTL+VE +YK
Sbjct: 384 SVVLQTLEGHLRAILGTLSVEEIYK 408



 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 56/134 (41%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
 Frame = +2

Query: 254 QDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQT-PT*RGTLTSVS 430
           +DR+ FA LVREVA+PDVGRMGIEILSFTIKD+ D V YL SLGK+QT    R     V+
Sbjct: 408 KDREAFAALVREVASPDVGRMGIEILSFTIKDIEDHVDYLNSLGKTQTAKVKRDADIGVA 467

Query: 431 LWLTEMLVLGKRNVRKTQWTSNIRWTQNRRQHETLQTTEGAV*SRNKYS*SGSALAYELQ 610
               +  +      ++         T         Q  + A         + + L+YELQ
Sbjct: 468 EAKRDAGIREAECEKQKMDVVYETQTNIADSSREYQMQKAAYDQEVNTRKAEAELSYELQ 527

Query: 611 AAKIKQRIRNEEIQ 652
             K KQ+IR+EEIQ
Sbjct: 528 GNKEKQKIRSEEIQ 541



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 31/44 (70%), Positives = 32/44 (72%)
 Frame = +1

Query: 379 LGEVADANVKRDADIGVALANRDAGIREAECEKNAMDVKYSMDT 510
           LG+   A VKRDADIGVA A RDAGIREAECEK  MDV Y   T
Sbjct: 450 LGKTQTAKVKRDADIGVAEAKRDAGIREAECEKQKMDVVYETQT 493



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +3

Query: 513 IEDNTRLFKLQKAQFDQEINTAKAEA 590
           I D++R +++QKA +DQE+NT KAEA
Sbjct: 495 IADSSREYQMQKAAYDQEVNTRKAEA 520


>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
          Length = 393

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 26/51 (50%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
 Frame = +3

Query: 96  VAQCKIMNED-ELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVE 245
           + Q KI  ++ E+L  AC+QFLGK+ ++ +   L+TLEGH RAI+GT+TVE
Sbjct: 63  ILQVKIQGQNQEMLHAACQQFLGKSAEQTRHIALETLEGHQRAIMGTMTVE 113



 Score = 35.5 bits (78), Expect = 0.045
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +2

Query: 152 VPGQDRQRD*DDCPANVGGSFASYSRNSYSRIGVQDRDQFAGLVREVAAPDVGRMGIEIL 331
           + GQ+++     C   +G S       +   +    R     +  EVA+ D+  MGI I+
Sbjct: 68  IQGQNQEMLHAACQQFLGKSAEQTRHIALETLEGHQRAIMGTMTVEVASSDLVNMGISIV 127

Query: 332 SFTIKDVYDDVQYLA 376
           S+TIKD+ D+ + +A
Sbjct: 128 SYTIKDIRDEEEAIA 142



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 587 SALAYELQAAKIKQRIRNEEIQ 652
           S +AY LQAA  KQ+I+ EE+Q
Sbjct: 182 SQMAYNLQAAVTKQKIKEEEMQ 203


>SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 385 PQAGQILDIVVDVLNREGQNLDSHSSDVRRSHFAYQARELV 263
           P   ++  ++VD  N  G+ L  HS +V+  +F+Y+ + L+
Sbjct: 221 PDQDRVNHVIVDASNSPGKILVVHSGNVKEENFSYRDKTLM 261


>SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4)
          Length = 400

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 385 PQAGQILDIVVDVLNREGQNLDSHSSDVRRSHFAYQAREL 266
           P   ++  ++VD  N  G+ L  HS +V+  +F+Y+ + L
Sbjct: 197 PDQDRVNHVIVDASNSPGKILVVHSGNVKEENFSYRDKTL 236


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 403 RWRLRLPQAGQILDIVVDVL 344
           RW + LPQA  ++DIV++ L
Sbjct: 746 RWAIMLPQAYHVIDIVIESL 765


>SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 134 EKFVFVHDLALGDSGHRERHSLGRFNVL--AHRVQCH 30
           EK V    L L D GHR +HSL   N L   H    H
Sbjct: 52  EKCVSALKLNLRDQGHRNKHSLSPPNALMATHNASSH 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,474,731
Number of Sequences: 59808
Number of extensions: 462191
Number of successful extensions: 1326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)