Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30538
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    29   4.5  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    29   4.5  

>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 78  PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 233
           PL    VA  +++NE +LL   CE+  G T+K+I    +T   T E  +RA   T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 78  PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 233
           PL    VA  +++NE +LL   CE+  G T+K+I    +T   T E  +RA   T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 78  PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 233
           PL    VA  +++NE +LL   CE+  G T+K+I    +T   T E  +RA   T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 78  PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 233
           PL    VA  +++NE +LL   CE+  G T+K+I    +T   T E  +RA   T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,724,791
Number of Sequences: 27780
Number of extensions: 333649
Number of successful extensions: 1038
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)