Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30538
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26400.1 68416.m03292 eukaryotic translation initiation facto...    31   0.79 
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila...    30   1.4  
At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransfer...    29   2.4  
At1g34520.1 68414.m04290 long-chain-alcohol O-fatty-acyltransfer...    29   2.4  
At1g34490.1 68414.m04287 membrane bound O-acyl transferase (MBOA...    29   2.4  
At5g56820.1 68418.m07090 F-box family protein contains F-box dom...    29   4.2  
At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containi...    29   4.2  
At5g58880.1 68418.m07377 hypothetical protein                          28   5.6  
At5g55380.1 68418.m06900 membrane bound O-acyl transferase (MBOA...    28   5.6  
At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOA...    28   7.3  
At3g60790.1 68416.m06800 F-box protein-related contains weak hit...    28   7.3  
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa...    27   9.7  
At1g30360.1 68414.m03712 early-responsive to dehydration stress ...    27   9.7  
At1g28220.1 68414.m03464 purine permease, putative similar to pu...    27   9.7  

>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
           4B, putative/ eIF-4B, putative similar to eukaryotic
           initiation factor 4B [Arabidopsis thaliana] GI:6739518
          Length = 532

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 152 VPGQDRQRD*DDC-PANVGGSFASYSRNSYSRIGVQDRDQFAG 277
           +P   RQR  ++  P  +GG F+SY   S  RIG +DRD   G
Sbjct: 89  LPTGPRQRSEEEMQPGRLGGGFSSYGGRSGGRIG-RDRDDSDG 130


>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
           to C-terminal half of transcription-repair coupling
           factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
           contains Pfam profile: helicases conserved C-terminal
           domain
          Length = 823

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -1

Query: 447 ISVSQSDTDVSVPLHVGVCDFPKLARYWTSS*TSLIVKDRISIPILPTSGAATSRTKPAN 268
           +S+  +   ++VPL + +C FP   R ++        K    +P++  S  + +  KP  
Sbjct: 2   MSLLPNPDPITVPLVLKLCSFPPPRRLFSLRLRRFTRKSSSLLPLVAVSSLSATAAKPTR 61

Query: 267 W 265
           W
Sbjct: 62  W 62


>At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase similarity to wax synthase
           wax synthase - Simmondsia chinensis, PID:g5020219
           similar to wax synthase [gi:5020219] from Simmondsia
           chinensis
          Length = 342

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -2

Query: 728 LSVLPPCVGFLVAPLLFAY 672
           LSVLP C  FLV PL F+Y
Sbjct: 37  LSVLPVCALFLVFPLFFSY 55


>At1g34520.1 68414.m04290 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein  wax
           synthase - Simmondsia chinensis, PID:g5020219  similar
           to wax synthase [gi:5020219] from Simmondsia chinensis
          Length = 287

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -2

Query: 728 LSVLPPCVGFLVAPLLFAY 672
           LSVLP CV FLV PL F +
Sbjct: 37  LSVLPVCVLFLVLPLFFVF 55


>At1g34490.1 68414.m04287 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related contains
           similarity to wax synthase  wax synthase - Simmondsia
           chinensis, PID:g5020219 similar to wax synthase
           [gi:5020219] from Simmondsia chinensis
          Length = 337

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -2

Query: 728 LSVLPPCVGFLVAPLLFAY 672
           LSVLP CV FLV PL F +
Sbjct: 37  LSVLPVCVLFLVLPLFFVF 55


>At5g56820.1 68418.m07090 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 435

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 319 SHSSDVRRSHFAYQARELVPVLYTYSTVRVPRIARK*PSNVCRTVILISL 170
           SH  D   S+      E+    Y YST+R PR       NVC+T++++ L
Sbjct: 99  SHDIDRLLSNIKPILHEITITSYRYSTIRFPR-----NLNVCQTLVVMKL 143


>At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 495

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +2

Query: 299 PDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTPT*RGTLTSVSLWLTEMLVLGKRNVRK 478
           PDV    I I SF     +D VQ L S  + Q      T+T V +  T + +LG+ + + 
Sbjct: 219 PDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIR-PNTITFVEMESTLIQMLGEDDCKP 277

Query: 479 TQWTSN 496
             WT N
Sbjct: 278 DSWTMN 283


>At5g58880.1 68418.m07377 hypothetical protein
          Length = 1088

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -2

Query: 257 LVHLFYCKSSENSSQMTLQRLQDSHLNLFDGLAQELLAGSCEKFVFVHDLALGDS 93
           LV L Y  ++ENSS + L ++QDSH +  D    + ++   EK   + D   G+S
Sbjct: 825 LVDLDY-GNAENSSDVILLQVQDSHKSPLDESVDQEISKEVEKTELLKDFC-GES 877


>At5g55380.1 68418.m06900 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related  similar to wax
           synthase [gi:5020219] from Simmondsia chinensis
          Length = 341

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
 Frame = -2

Query: 728 LSVLPPCVGFLVAPLLFA---YDARRLRFVSLRFGFS-VLFSL----LAVRKPKRFRFSC 573
           LS+LP C+ FLV PL  +   + A  + F+S    F  +LF+     L    PK  RF C
Sbjct: 37  LSILPVCILFLVLPLFLSCVHFCAISVLFLSWLANFKLLLFAFDEGPLFPLPPKLSRFIC 96

Query: 572 IYFL-IKLR 549
              L IK+R
Sbjct: 97  FACLPIKIR 105


>At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related contains
           similarity to wax synthase  wax synthase - Simmondsia
           chinensis, PID:g5020219 similar to wax synthase
           [gi:5020219] from Simmondsia chinensis
          Length = 346

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 728 LSVLPPCVGFLVAPLLFAYDARRLRFVSLRFGFSVLFSLLAVRKPKRFRFS 576
           LSVLP CV FL+ P+ F+         ++   F++ F L  +  PK   F+
Sbjct: 37  LSVLPVCVLFLIIPIFFS---------TVHSSFTIAFFLSGLAVPKLILFA 78


>At3g60790.1 68416.m06800 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain
          Length = 488

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +3

Query: 78  PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVE*VYK 257
           P  +   A+CK++      T A  +  GK +K     +    +  L+ IL TL+ +    
Sbjct: 20  PPLLASNARCKVLR-----TGASSKGKGKGIKYPVDRISMLPDEMLQKILSTLSTKDAVI 74

Query: 258 TGTNSRAWYAKWLR 299
           T T S+ W  +W R
Sbjct: 75  TSTLSKRWVDQWKR 88


>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
           family protein contains weak similarity to zinc finger
           proteins
          Length = 337

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +2

Query: 317 GIEILSFTIKDVYDDVQ---YLASLGKSQTPT*RGTLTSVSLWLTEMLVLGKRNVRKTQW 487
           GI++ +F   +++ +V    +  ++    TP   G   S ++ +T+++   ++   K + 
Sbjct: 193 GIDLTAFKDSELFKEVDTDVFPLAVKAEATPAEEGKSGSTNVQITQVVYTKEKGEIKIEV 252

Query: 488 TSNIRWTQNRRQHETLQ 538
              I W  N+R++E L+
Sbjct: 253 VKQILWV-NKRRYELLE 268


>At1g30360.1 68414.m03712 early-responsive to dehydration stress
           protein (ERD4) nearly identical to ERD4 protein
           (early-responsive to dehydration stress) [Arabidopsis
           thaliana] GI:15375406; contains Pfam profile PF02714:
           Domain of unknown function DUF221
          Length = 724

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 263 DQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQY 370
           +QFA LVR++ AP  G+   E +    +++Y +  Y
Sbjct: 190 EQFAILVRDMPAPPDGQTQKEFIDSYFREIYPETFY 225


>At1g28220.1 68414.m03464 purine permease, putative similar to
           purine permease GI:7620007 from [Arabidopsis thaliana]
          Length = 351

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
 Frame = -2

Query: 710 CVGFLVAPLLFAYDARRLRFVSL--RFGFSV-----LFSLLAVRKPKRFRFSCIYFLIKL 552
           C G L+  L F    +R+ F +     GF V     LFS +  R+      S  +FLIK 
Sbjct: 18  CGGPLIMRLYFNNGGKRIWFSTFLETAGFPVIFIPLLFSYITRRRSNNVGDSTSFFLIKP 77

Query: 551 RLL*FEE-SRVVFYFVSIEYLTSIAFFSHS-ASLIPASRLA 435
           RLL       ++  F +  Y   IA+   S A+LI AS+LA
Sbjct: 78  RLLIAAVIVGILSGFDNYLYAYGIAYLPVSTAALIIASQLA 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,302
Number of Sequences: 28952
Number of extensions: 314130
Number of successful extensions: 932
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)