Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30537
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 98 9e-22
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 96 4e-21
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.1
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 3.3
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.3
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 5.8
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 7.7
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.7
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 98.3 bits (234), Expect = 9e-22
Identities = 44/82 (53%), Positives = 61/82 (74%)
Frame = +1
Query: 262 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 441
D E SFRK +L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+
Sbjct: 76 DEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLC 135
Query: 442 RVFCIGFTNKDSLSQRKTCYAQ 507
R+F IGFT++ +KT YAQ
Sbjct: 136 RIFVIGFTSRRVNQVKKTTYAQ 157
Score = 85.8 bits (203), Expect = 5e-18
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = +2
Query: 89 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 253
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ 74
Score = 58.4 bits (135), Expect = 9e-10
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = +3
Query: 507 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK*K 683
++Q+RAI +KM ++I ++E+V KLIP+ I + IEKA + IYPL++V +RK K
Sbjct: 158 SSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVK 216
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 96.3 bits (229), Expect = 4e-21
Identities = 43/82 (52%), Positives = 61/82 (74%)
Frame = +1
Query: 262 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 441
D E +FRK +L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+
Sbjct: 76 DEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLC 135
Query: 442 RVFCIGFTNKDSLSQRKTCYAQ 507
RVF IGFT + + +KT YAQ
Sbjct: 136 RVFVIGFTRRRANQVKKTTYAQ 157
Score = 84.2 bits (199), Expect = 2e-17
Identities = 36/55 (65%), Positives = 45/55 (81%)
Frame = +2
Query: 89 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 253
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ 74
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/59 (44%), Positives = 44/59 (74%)
Frame = +3
Query: 507 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK*K 683
++Q+RAIR+KM ++I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RK K
Sbjct: 158 SSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVK 216
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 501 RPATQVRA-IRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 674
R TQ A + + E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 372 RDVTQFLACLAQASHEFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 295 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 426
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 390 LPFFNHPPELIGCEVHAVEVAEHITS 313
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 367 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQPLRSEQSERKCVK 546
++ W L+ T GYV+R GFT+ ++ + K +A ++ ER +
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFADK-DTKLYERALQQ 853
Query: 547 SLHATS 564
SL S
Sbjct: 854 SLDTIS 859
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +1
Query: 262 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIE-ANIDVKTTDGYV 438
DAE + + F I EY++ N D T K + +W ++ E + D +
Sbjct: 111 DAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK---FINEWDSIFEPVKSEFNLVDASL 167
Query: 439 LRVFCIGFTNKDSLSQRK 492
C+ ++ L+ K
Sbjct: 168 GLAKCLAIKDEQELANIK 185
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 346 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 444
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,783
Number of Sequences: 5004
Number of extensions: 59944
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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