Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30537
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   105   3e-23
Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    28   7.1  
Z81069-2|CAB02992.1|  310|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    27   9.4  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  105 bits (252), Expect = 3e-23
 Identities = 51/82 (62%), Positives = 59/82 (71%)
 Frame = +1

Query: 262 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 441
           ++E  FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY L
Sbjct: 74  NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTL 133

Query: 442 RVFCIGFTNKDSLSQRKTCYAQ 507
           RVF I FT K     +KT Y +
Sbjct: 134 RVFVIAFTKKSVNQVKKTSYTK 155



 Score =  100 bits (239), Expect = 1e-21
 Identities = 44/53 (83%), Positives = 50/53 (94%)
 Frame = +2

Query: 92  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 250
           VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL 72



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 32/58 (55%), Positives = 44/58 (75%)
 Frame = +3

Query: 510 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK*K 683
           +++R IR +M   I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRK K
Sbjct: 157 SKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVK 214


>Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical
           protein M04G12.1b protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 407 TLM*RQPMDTFYVSSA----LVSPIRTP*ANARRATPSHSGQSNQKENV*NH 550
           TL  +QP+ T  V+SA     +SP RTP       +P H    N  E V  H
Sbjct: 117 TLTQQQPLQTLPVTSANGIGRISPQRTPQPTVLPTSPFHVPTMNNLEQVLTH 168


>Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical
           protein M04G12.1a protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 407 TLM*RQPMDTFYVSSA----LVSPIRTP*ANARRATPSHSGQSNQKENV*NH 550
           TL  +QP+ T  V+SA     +SP RTP       +P H    N  E V  H
Sbjct: 144 TLTQQQPLQTLPVTSANGIGRISPQRTPQPTVLPTSPFHVPTMNNLEQVLTH 195


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 338 WKLQSTLRPCTYSAINLNLRKDLSASVSLVDQPGKLRKLFPSILPKQFSFPGYG 177
           WK    LRP T +  + NL K+  +S S    PG  +   P +  K  +  G G
Sbjct: 33  WK---NLRPQTATGADTNLSKNTKSSDSANSSPGSRKSTSPPVSKKGIAQSGKG 83


>Z81069-2|CAB02992.1|  310|Caenorhabditis elegans Hypothetical
           protein F25H9.2 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
 Frame = +1

Query: 307 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY--VLRVFCIGFTNKDSL 480
           V G+N+ CN H + + ++ L  ++   +      + +     Y   LR+  + + + D+L
Sbjct: 150 VDGKNIYCNKHILAMNSEVLMELLFPDEDHDVNELQLSNDFEYEPTLRIVKVFYNDGDAL 209

Query: 481 S----QRKTCYAQPLRSEQSERKCVKSLHATSL 567
           +         YA  L+SE + ++C + +  T L
Sbjct: 210 TGDNVDETLEYATKLKSENARQRCERWISKTQL 242


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 641 MAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTH 537
           ++GL+   GNG++ +L      FRV DV C +  H
Sbjct: 184 ISGLIPAFGNGIKEKLED--GGFRVLDVGCGEGFH 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,247,044
Number of Sequences: 27780
Number of extensions: 345620
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)