Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30537
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   124   6e-29
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           122   2e-28
At3g61035.1 68416.m06829 cytochrome P450 family protein similar ...    30   1.6  
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    29   2.2  
At5g62520.1 68418.m07847 expressed protein                             28   5.0  
At3g15410.1 68416.m01955 leucine-rich repeat family protein cont...    28   5.0  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   6.6  
At1g30730.1 68414.m03756 FAD-binding domain-containing protein s...    28   6.6  
At4g35160.1 68417.m04998 O-methyltransferase family 2 protein si...    27   8.8  
At1g30720.1 68414.m03755 FAD-binding domain-containing protein s...    27   8.8  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  124 bits (299), Expect = 6e-29
 Identities = 57/92 (61%), Positives = 69/92 (75%)
 Frame = +1

Query: 262 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 441
           D + ++RK RL AE VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y L
Sbjct: 76  DEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTL 135

Query: 442 RVFCIGFTNKDSLSQRKTCYAQPLRSEQSERK 537
           R+FCI FT + +   ++TCYAQ  +  Q  RK
Sbjct: 136 RLFCIAFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 45/54 (83%), Positives = 50/54 (92%)
 Frame = +2

Query: 92  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 253
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 28/59 (47%), Positives = 47/59 (79%)
 Frame = +3

Query: 507 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK*K 683
           ++Q+R IR+KM +I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL++V IRK K
Sbjct: 158 SSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVK 216


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  122 bits (295), Expect = 2e-28
 Identities = 57/92 (61%), Positives = 69/92 (75%)
 Frame = +1

Query: 262 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 441
           D + ++RK RL AE VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY L
Sbjct: 76  DEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTL 135

Query: 442 RVFCIGFTNKDSLSQRKTCYAQPLRSEQSERK 537
           R+FCI FT + +   ++TCYAQ  +  Q  RK
Sbjct: 136 RMFCIAFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 44/54 (81%), Positives = 48/54 (88%)
 Frame = +2

Query: 92  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 253
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 29/59 (49%), Positives = 47/59 (79%)
 Frame = +3

Query: 507 ATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK*K 683
           ++Q+R IR+KM EI+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL++V IRK K
Sbjct: 158 SSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVK 216


>At3g61035.1 68416.m06829 cytochrome P450 family protein similar to
           Cytochrome P450 76C2 (SP:O64637) [Arabidopsis thaliana]
          Length = 340

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 677 LSDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSGW 504
           L DA IA+R   +   +D L   + + ++  + E   S+V  ND  HFL   S +  W
Sbjct: 250 LIDARIAERSSQIGPRVDALRGDLLDSVIDLIQE-EGSEVDMNDIKHFLCTNSTIVEW 306


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 665 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLS 510
           +IAQRV  +AG+  +  N +    V  LP F    + C+D  H ++D +  S
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKS 476


>At5g62520.1 68418.m07847 expressed protein
          Length = 309

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 504 PATQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKAC 638
           P +Q+  I+K   +   R +T SEL + V  +  D +   I KAC
Sbjct: 259 PPSQILVIQKHYKDQQNRRITRSELIQRVRSITGDKLLVHIIKAC 303


>At3g15410.1 68416.m01955 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596;
           identical to leucine-rich repeat protein [Arabidopsis
           thaliana] gi|2760084|emb|CAA76000
          Length = 584

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 471 GLLEPTQDVLR-PATQVRAIRKKMCEIITRDVTN 569
           GLLEPT +VLR     +R+IR+ + E  T+ V N
Sbjct: 542 GLLEPTLEVLRLDGNPLRSIRRPILERGTKAVLN 575


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -2

Query: 223  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 77
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


>At1g30730.1 68414.m03756 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 526

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 414 CEDNRWIRSTCLLHWFHQ*GLLEPTQDVLRPATQVRAIRKKMCEIITRDVTNSELREVVN 593
           C + RWI S  +L W     +  PT  +L P    +   K+  + + R V+ + L  ++ 
Sbjct: 334 CTEMRWIDS--VLFWAGY-PVGTPTSVLLNPTVTKKLFMKRKSDYVKRPVSRTGLGLILK 390

Query: 594 KLI 602
           KL+
Sbjct: 391 KLV 393


>At4g35160.1 68417.m04998 O-methyltransferase family 2 protein
           similar to caffeic acid O-methyltransferase, Pinus
           taeda, gb:U39301
          Length = 382

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 267 RVSVTCRSARETSKTLPFNPSEAIFVPWVRLTSVV 163
           R+ +T R  +  +  + F  +  +  PW+RL+SVV
Sbjct: 117 RLMITRRDGKSLAPFVLFETTPEMLAPWLRLSSVV 151


>At1g30720.1 68414.m03755 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +3

Query: 414 CEDNRWIRSTCLLHWFHQ*GLLEPTQDVLRPATQVRAIRKKMCEIITRDVTNSELREVVN 593
           C + RWI S  +L W     +  PT  +L P    +   K+  + + R ++ ++L  ++ 
Sbjct: 335 CTEMRWIDS--VLFWDDY-PVGTPTSVLLNPLVAKKLFMKRKSDYVKRLISRTDLGLILK 391

Query: 594 KLI 602
           KL+
Sbjct: 392 KLV 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,787
Number of Sequences: 28952
Number of extensions: 327205
Number of successful extensions: 960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)