Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30534
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.8  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   6.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   6.5  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 5   PFDHITDNEIDEYRRDVERKARGERIRH*LVRIGGDKRGADD 130
           P + + D   D YR   E K R   +R  L+ +GG +   DD
Sbjct: 69  PLNELFDVTRDNYRHITELKRRFPGLRV-LLSVGGGEDIGDD 109


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 206 ASAGPKPTRSGPERC*STDFLNAERAHVDSTRGDHTVNGD 325
           AS  P P     E C  T F+N++ +  +       ++GD
Sbjct: 41  ASGAPHPAALPIEGCNETGFINSQPSMAEFMTALPHLSGD 80


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 206 ASAGPKPTRSGPERC*STDFLNAERAHVDSTRGDHTVNGD 325
           AS  P P     E C  T F+N++ +  +       ++GD
Sbjct: 41  ASGAPHPAALPIEGCNETGFINSQPSMAEFMTALPHLSGD 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,279
Number of Sequences: 336
Number of extensions: 1551
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)