Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30534
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   9.1  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   9.1  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 407 RWKPPSTESPGRPLYCCERMYSDGRPNG 324
           R+ PP+  +P  PL+      S G+P G
Sbjct: 255 RYCPPAVVNPEHPLFLLYTSGSTGKPKG 282


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 201 SLFSKLGVRRATPLRSRTGRWPVTSSAPRLSPPIRTSQCRIRSP 70
           +LF+ L      P+       P+T+S  +L  P  +S C+  SP
Sbjct: 634 NLFADLERPSTPPVEIERALTPITTSPQKLKLPRSSSPCKNPSP 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,742
Number of Sequences: 5004
Number of extensions: 26345
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)