Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30534
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920...    30   1.8  
06_03_0139 + 17130980-17131594,17131740-17132009                       28   5.4  
04_04_1324 + 32659752-32661972,32662067-32662761                       28   7.1  
02_04_0381 - 22497519-22497769,22498157-22498247                       28   7.1  
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947     27   9.4  

>02_02_0469 +
           10691648-10691692,10691755-10691907,10692043-10692093,
           10692162-10692224,10692327-10693031,10693128-10693223,
           10693307-10695547
          Length = 1117

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 269 NAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEV-SQGSPSKEASTEDS 415
           N ER  VD   GD T + DHS  H    + S   V S  +PS++ S+E +
Sbjct: 381 NTERPIVDKL-GDQTSSIDHSLQHTEEHNRSHDNVESSEAPSEDTSSESN 429


>06_03_0139 + 17130980-17131594,17131740-17132009
          Length = 294

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = -2

Query: 282 ALSAFKKSVDQHRSGPLLVGFGPALAWSLFSKLGVRRATPLRSRTGRWPVTSSAPRLSPP 103
           A+S     +D H + P L+G+GP  A S  S       +     +G   VT++ PR S  
Sbjct: 110 AVSWMDMDMDAHGAAPPLIGYGPTAATSSPSSCFSSGGS---GDSGMVMVTTTTPR-SAA 165

Query: 102 IRTSQCRIRSP 70
              SQ R R P
Sbjct: 166 ASGSQRRARPP 176


>04_04_1324 + 32659752-32661972,32662067-32662761
          Length = 971

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 266 LNAERAHVDSTRGDHT-VNGDHSDAHQSTFSHSSKEVSQGSPSKEASTEDS 415
           ++   A  +   G+H  ++   SDA  ST S S  +   G P + A+ +DS
Sbjct: 421 MSLNEAGTEQPSGEHRQLSVSSSDAGSSTDSTSDSDTPGGDPKEPAAVDDS 471


>02_04_0381 - 22497519-22497769,22498157-22498247
          Length = 113

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = +2

Query: 269 NAERAHVDSTRGDHTVNG---DHSDAHQSTFSHSSKEVSQGSPSKE 397
           +AE  H D   GDH  +    DH D   S   H  +     SP KE
Sbjct: 26  SAEETHDDHDGGDHDPSPSPPDHEDPSPSPPDHEDEPPPPSSPGKE 71


>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
          Length = 660

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 25/71 (35%), Positives = 31/71 (43%)
 Frame = -2

Query: 300 LVLSTWALSAFKKSVDQHRSGPLLVGFGPALAWSLFSKLGVRRATPLRSRTGRWPVTSSA 121
           L LS  A    KKS     SG    G G   A    SK G   +TP   R GR P  ++A
Sbjct: 583 LKLSAAATEQQKKS-SSSSSGK---GDGRKEAGGSGSKKGAAASTPPGRRIGRPPKRAAA 638

Query: 120 PRLSPPIRTSQ 88
           P   PP + ++
Sbjct: 639 PPTPPPSKRAK 649


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,159
Number of Sequences: 37544
Number of extensions: 200299
Number of successful extensions: 574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)