Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30534
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39) 35 0.063
SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13) 33 0.25
SB_20979| Best HMM Match : ATP-gua_PtransN (HMM E-Value=5.6e-08) 33 0.25
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028) 30 1.8
SB_49863| Best HMM Match : RseA_C (HMM E-Value=8.1) 28 5.5
SB_51110| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_54212| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_33944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39)
Length = 593
Score = 34.7 bits (76), Expect = 0.063
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +2
Query: 218 PKPTRSGPERC*STDFLNAERAHVDSTRGDH-TVNGDHSDAHQSTF-SHSSKEVSQGSPS 391
P +G E C ST+ LN E+ VD+T +H T D + + SH + + +QG
Sbjct: 463 PSLDSNGEETCTSTNALNGEQRLVDTTNTNHDTETTDRQEERNPNYKSHKNTDNTQGDFE 522
Query: 392 KEASTE-DSPXXXXXXXXGLR 451
K E SP G+R
Sbjct: 523 KVVGNELLSPARSGPKSSGIR 543
>SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)
Length = 490
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = +2
Query: 221 KPTRSGPERC*STDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEVSQGSPSKEA 400
K G ER TD + E + S T GD H+S++ K VS PS
Sbjct: 217 KERYQGDERTQETDTFSYEENRISSAPHSSTEQGDFPSKHESSYPRVEKNVSYVYPSNVV 276
Query: 401 S 403
S
Sbjct: 277 S 277
>SB_20979| Best HMM Match : ATP-gua_PtransN (HMM E-Value=5.6e-08)
Length = 322
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = +2
Query: 221 KPTRSGPERC*STDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEVSQGSPSKEA 400
K G ER TD + E + S T GD H+S++ K VS PS
Sbjct: 208 KERYQGDERTQETDTFSYEENRISSAPHSSTEQGDFPSKHESSYPRVEKNVSYVYPSNVV 267
Query: 401 S 403
S
Sbjct: 268 S 268
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 401 KPPSTESPGRPLYCCERMYSDGRPNGHR*Q 312
KPP+ S + CC+RMY++ N H+ Q
Sbjct: 481 KPPNVTSSFSMIRCCDRMYTEWASNAHQPQ 510
>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
Length = 1444
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 227 TRSGPERC*STDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEVSQGSPSKEAST 406
TRSGP+ H+D R +T +G H D +S ++ S + P + T
Sbjct: 1068 TRSGPQIDPLGSVFTRSGPHIDPLRSVYTRSGPHIDPLRSVYTRSGPHI---DPLRSVCT 1124
Query: 407 EDSP 418
+ P
Sbjct: 1125 KSGP 1128
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 227 TRSGPERC*STDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEV 373
+RSGP H+D R HT +G H D +S ++ S ++
Sbjct: 1026 SRSGPHIDPLRSVYTRSGPHIDPLRSVHTRSGPHVDPLRSVYTRSGPQI 1074
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +2
Query: 227 TRSGPERC*STDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEVSQGSPSKEAST 406
TRSGP H+D R +T +G H D S F+ S + P + T
Sbjct: 1110 TRSGPHIDPLRSVCTKSGPHIDPLRSVYTRSGPHIDPLGSVFTRSGPHI---DPLRSVCT 1166
Query: 407 EDSP 418
+ P
Sbjct: 1167 KSGP 1170
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 227 TRSGPERC*STDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEV 373
TRSGP H+D R +T +G H D +S ++ S +
Sbjct: 1180 TRSGPHIDPLRSVYTRSGPHIDPLRSVYTRSGPHIDPLRSVYTRSGPHI 1228
>SB_49863| Best HMM Match : RseA_C (HMM E-Value=8.1)
Length = 195
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 218 PKPTRSGPERC*STDFLNAERAHVDSTRGDH-TVNGDHSDAHQSTF-SHSSKEVSQGSPS 391
P +G E C ST+ LN E+ VD+T ++ T D + + SH + + +Q
Sbjct: 65 PSLGSNGEETCTSTNALNGEQRLVDTTNTNYDTETTDRQEERNPNYKSHKNTDNTQRDFE 124
Query: 392 KEASTE-DSPXXXXXXXXGLR 451
K E SP G+R
Sbjct: 125 KVVGKELLSPARSGPKSAGIR 145
>SB_51110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 23 DNEIDEYRRDVERKAR 70
D E+D YRR ERKAR
Sbjct: 49 DEELDRYRRQAERKAR 64
>SB_54212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 272 AERAHVDSTRGDHTVNGDHSDAHQS 346
++ + D+T HT NG H HQS
Sbjct: 241 SQSRNYDNTHSTHTSNGTHQHVHQS 265
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -2
Query: 267 KKSVDQHRSGPLLVGFGPALAWSLFSKLGVRRATPLRSRTGRWPVTSSAPRLSPP 103
++ V Q G L PA+A L + P S G W S+AP+ PP
Sbjct: 1666 RRQVLQQHGGNALAPLLPAVAKRYLQALA--KNVPSPSPEGLWDTCSTAPKTRPP 1718
>SB_33944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 305 DHTVNGDHSDAHQSTFSHSSKEVSQGSPSKEASTEDS 415
+HT+ ++ DA + + + V +PSK +ST DS
Sbjct: 14 EHTICVNYLDAEVAEAQATKQRVLSSAPSKSSSTSDS 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,048,952
Number of Sequences: 59808
Number of extensions: 221289
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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