Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30534
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z46266-4|CAA86414.2|  787|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AB011285-1|BAA24965.1|  275|Caenorhabditis elegans GAP-2-9 protein.    28   4.8  

>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 294 LSTWALSAFKKSVDQHRSGPLLVGFGPALAWSLFSKL 184
           L +W  +   K + +H  G +LV  GPA++ S F+ +
Sbjct: 355 LESWRTAPLDKPMREHMMGEVLVETGPAISISAFTNM 391


>Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical
           protein K03D7.9 protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 237 PLLVGFGPALAWSLFSKLGVRRATPLRSRTGRWPVTSS 124
           P+  GF P L W L     V+R   L     +W VT S
Sbjct: 20  PISSGFSPGLVWFLSGTAAVQRFVILYISKYKWLVTGS 57


>Z46266-4|CAA86414.2|  787|Caenorhabditis elegans Hypothetical
           protein ZK899.8g protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 266 LNAERAHVDSTRGDHTVNGDHSDAHQSTFSHS--SKEVSQGSPS 391
           L      V S  G++TVN  HSD+  S  + +   K  SQ SPS
Sbjct: 56  LKKNYVRVSSLFGEYTVNTSHSDSGTSRIASALGGKSSSQESPS 99


>AB011285-1|BAA24965.1|  275|Caenorhabditis elegans GAP-2-9 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 266 LNAERAHVDSTRGDHTVNGDHSDAHQSTFSHS--SKEVSQGSPS 391
           L      V S  G++TVN  HSD+  S  + +   K  SQ SPS
Sbjct: 56  LKKNYVRVSSLFGEYTVNTSHSDSGTSRIASALGGKSSSQESPS 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,425,129
Number of Sequences: 27780
Number of extensions: 155629
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)