Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30534
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80010.1 68414.m09362 far-red impaired responsive protein, pu...    31   0.48 
At2g37900.1 68415.m04652 proton-dependent oligopeptide transport...    28   4.5  
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro...    27   7.8  

>At1g80010.1 68414.m09362 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 696

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +2

Query: 188 FENRDQASAGPKPTRSGPERC*STDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSK 367
           F+    A +  K TR+G +       ++ +R  VD  + DH  + D   AH S  SH  K
Sbjct: 119 FKLLKDAHSRRKETRTGCQAMIRLRLIHFDRWKVDQVKLDHNHSFDPQRAHNSK-SH-KK 176

Query: 368 EVSQGSPSKEASTEDSP 418
             S  SP+ + + E  P
Sbjct: 177 SSSSASPATKTNPEPPP 193


>At2g37900.1 68415.m04652 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 575

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 204 WSLFSKLGVRRATPLRSRTGRW 139
           W L S L  R   PLR+RTG W
Sbjct: 21  WVLDSSLDSRGRVPLRARTGAW 42


>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 1102

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 278 RAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEVSQGSPSKEASTED 412
           R  VDS+  D+TV   +  A  +  S  +  +   SPSK   T++
Sbjct: 742 RKSVDSSSSDYTVENVYKQAESTNPSDETDSLDDPSPSKVNVTDN 786


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,956,012
Number of Sequences: 28952
Number of extensions: 148184
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)