Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30533
(855 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P19404 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 132 1e-29
UniRef50_Q4UM09 Cluster: NADH-quinone oxidoreductase subunit E; ... 126 7e-28
UniRef50_Q2GDD2 Cluster: NADH dehydrogenase I, E subunit; n=1; N... 113 4e-24
UniRef50_O22769 Cluster: NADH-ubiquinone oxidoreductase 24 kDa s... 112 1e-23
UniRef50_Q5ACX6 Cluster: Potential mitochondrial Complex I, NUHM... 109 7e-23
UniRef50_Q9UUT9 Cluster: Subunit NUHM of protein NADH:Ubiquinone... 109 9e-23
UniRef50_A5CES4 Cluster: NADH dehydrogenase I chain E; n=1; Orie... 108 2e-22
UniRef50_Q6V9B3 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 107 3e-22
UniRef50_Q1GTK2 Cluster: NADH-quinone oxidoreductase, E subunit;... 106 8e-22
UniRef50_Q4QEG7 Cluster: NADH-ubiquinone oxidoreductase, mitocho... 106 8e-22
UniRef50_Q54F10 Cluster: NADH dehydrogenase; n=1; Dictyostelium ... 105 2e-21
UniRef50_Q0BSK6 Cluster: NADH-quinone oxidoreductase chain E; n=... 103 4e-21
UniRef50_A3U1M2 Cluster: ATP synthase subunit E; n=9; Alphaprote... 101 2e-20
UniRef50_A0E600 Cluster: Chromosome undetermined scaffold_8, who... 100 4e-20
UniRef50_Q2TZN8 Cluster: NADH:ubiquinone oxidoreductase; n=11; P... 100 5e-20
UniRef50_Q9VVF0 Cluster: CG6485-PA; n=2; Sophophora|Rep: CG6485-... 99 1e-19
UniRef50_Q00RX3 Cluster: Putative NADH-ubiquinone oxidoreductase... 99 2e-19
UniRef50_Q5FGV2 Cluster: NADH-quinone oxidoreductase chain E; n=... 97 4e-19
UniRef50_Q83BQ9 Cluster: NADH dehydrogenase I, E subunit; n=3; C... 94 5e-18
UniRef50_A5NY87 Cluster: NADH-quinone oxidoreductase, E subunit;... 88 2e-16
UniRef50_P29914 Cluster: NADH-quinone oxidoreductase chain 2; n=... 88 2e-16
UniRef50_Q8G1B3 Cluster: NADH dehydrogenase I, E subunit; n=9; R... 87 5e-16
UniRef50_A7DLV4 Cluster: NADH-quinone oxidoreductase, E subunit;... 87 5e-16
UniRef50_Q5DLW2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kD... 87 5e-16
UniRef50_A3UCV4 Cluster: ATP synthase subunit E; n=4; Alphaprote... 85 2e-15
UniRef50_Q98KQ9 Cluster: NADH-ubiquinone dehydrogenase chain E 1... 84 4e-15
UniRef50_A6H1R0 Cluster: NADH dehydrogenase I, E subunit; n=2; B... 83 1e-14
UniRef50_Q11VB6 Cluster: NADH dehydrogenase I chain E; n=2; Bact... 81 3e-14
UniRef50_P56909 Cluster: NADH-quinone oxidoreductase subunit E 1... 80 6e-14
UniRef50_Q9PGJ1 Cluster: NADH-ubiquinone oxidoreductase, NQO2 su... 79 1e-13
UniRef50_Q0C8X0 Cluster: Putative uncharacterized protein; n=1; ... 78 2e-13
UniRef50_A6FCN2 Cluster: NuoE2 NADH I CHAIN E; n=1; Moritella sp... 76 1e-12
UniRef50_P56910 Cluster: NADH-quinone oxidoreductase subunit E 2... 76 1e-12
UniRef50_Q6MIR6 Cluster: NADH dehydrogenase I chain E; n=1; Bdel... 75 2e-12
UniRef50_Q82TU7 Cluster: Respiratory-chain NADH dehydrogenase 24... 74 5e-12
UniRef50_Q0PQQ4 Cluster: NADH dehydrogenase I E subunit; n=1; En... 73 7e-12
UniRef50_A2F771 Cluster: Respiratory-chain NADH dehydrogenase 24... 73 1e-11
UniRef50_A1WXW3 Cluster: NADH-quinone oxidoreductase, E subunit;... 71 4e-11
UniRef50_A5UZH6 Cluster: NADH-quinone oxidoreductase, E subunit;... 70 7e-11
UniRef50_A3ERJ3 Cluster: NADH ubiquinone oxidoreductase 24 kD su... 70 9e-11
UniRef50_P65574 Cluster: NADH-quinone oxidoreductase subunit E; ... 70 9e-11
UniRef50_Q6MDR2 Cluster: Putative NADH-ubiquinone oxidoreductase... 69 1e-10
UniRef50_A7HLQ9 Cluster: NADH-quinone oxidoreductase, E subunit;... 69 2e-10
UniRef50_A7CUG1 Cluster: NADH-quinone oxidoreductase, E subunit;... 69 2e-10
UniRef50_Q5JIQ1 Cluster: NADH:ubiquinone oxidoreductase, subunit... 69 2e-10
UniRef50_Q3ZXM4 Cluster: Hydrogenase subunit HymA; n=13; cellula... 69 2e-10
UniRef50_P0AFD3 Cluster: NADH-quinone oxidoreductase subunit E; ... 68 3e-10
UniRef50_Q0AZ71 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 67 6e-10
UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=... 66 8e-10
UniRef50_A6PRE1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 66 8e-10
UniRef50_Q6A6G2 Cluster: NADH dehydrogenase I chain E; n=1; Prop... 66 1e-09
UniRef50_A3THI9 Cluster: ATP synthase subunit E; n=3; Actinomyce... 66 1e-09
UniRef50_Q8NK93 Cluster: NADH-ubiquinone oxidoreductase 24kDa su... 66 1e-09
UniRef50_Q2RHR8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 65 2e-09
UniRef50_Q9WXM7 Cluster: NADP-reducing hydrogenase, subunit A; n... 65 2e-09
UniRef50_Q746S5 Cluster: NADH dehydrogenase I, E subunit; n=4; D... 65 2e-09
UniRef50_Q1EVZ9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 64 3e-09
UniRef50_Q0EZQ5 Cluster: NADH dehydrogenase I chain E; n=1; Mari... 64 3e-09
UniRef50_Q02CT9 Cluster: NADH-quinone oxidoreductase, E subunit;... 64 4e-09
UniRef50_A4SXP9 Cluster: NADH-quinone oxidoreductase, E subunit;... 64 4e-09
UniRef50_A0UV12 Cluster: NADH-quinone oxidoreductase, E subunit;... 64 6e-09
UniRef50_A1HP41 Cluster: NADH-quinone oxidoreductase, E subunit;... 63 7e-09
UniRef50_O27591 Cluster: NADP-reducing hydrogenase, subunit A; n... 63 1e-08
UniRef50_Q092T1 Cluster: NADH-ubiquinone oxidoreductase 24 kDa s... 62 1e-08
UniRef50_Q8ABI7 Cluster: NADH-ubiquinone oxidoreductase subunit;... 62 2e-08
UniRef50_Q67JG1 Cluster: Putative iron hydrogenase small subunit... 62 2e-08
UniRef50_A5FSK9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 62 2e-08
UniRef50_A5D2H5 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 62 2e-08
UniRef50_Q9S5X7 Cluster: Fe-hydrogenase, subunit gamma; n=5; The... 62 2e-08
UniRef50_A4J9N9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 62 2e-08
UniRef50_Q2LYE8 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 61 3e-08
UniRef50_Q2AG84 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 61 3e-08
UniRef50_Q8YYU5 Cluster: NADH dehydrogenase I chain E; n=4; Bact... 61 4e-08
UniRef50_Q2JFL6 Cluster: NADH-quinone oxidoreductase, E subunit;... 61 4e-08
UniRef50_Q01WJ0 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 61 4e-08
UniRef50_Q8RBD2 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 60 5e-08
UniRef50_Q608Y0 Cluster: NADH dehydrogenase I, E subunit; n=5; B... 60 5e-08
UniRef50_Q1PYY2 Cluster: Similar to nuoE subunit of the NADH:ubi... 60 9e-08
UniRef50_A7HII1 Cluster: NADH-quinone oxidoreductase, E subunit;... 60 9e-08
UniRef50_Q67P18 Cluster: NADH dehydrogenase I subunit E; n=1; Sy... 59 1e-07
UniRef50_Q3A640 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 59 1e-07
UniRef50_Q3A461 Cluster: NADP-reducing hydrogenase chain A; n=5;... 59 1e-07
UniRef50_Q1PW48 Cluster: Similar to NADH:ubiquinone oxidoreducta... 59 1e-07
UniRef50_A1AVR6 Cluster: NADH-quinone oxidoreductase, E subunit;... 59 1e-07
UniRef50_Q0AWA4 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 59 2e-07
UniRef50_A5FS13 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 59 2e-07
UniRef50_Q89AU3 Cluster: NADH-quinone oxidoreductase subunit E; ... 58 2e-07
UniRef50_Q4AMU5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 58 4e-07
UniRef50_Q1NQY7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 58 4e-07
UniRef50_A5UZ48 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 58 4e-07
UniRef50_A4J528 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 58 4e-07
UniRef50_Q1IS36 Cluster: NADH-quinone oxidoreductase, E subunit;... 57 5e-07
UniRef50_A0UVM6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 57 5e-07
UniRef50_Q6FE68 Cluster: NADH dehydrogenase I chain E; n=5; Mora... 56 9e-07
UniRef50_Q1PWG7 Cluster: Similar to to proton-translocating NADH... 56 9e-07
UniRef50_Q5BT40 Cluster: SJCHGC02806 protein; n=1; Schistosoma j... 56 1e-06
UniRef50_Q9RU91 Cluster: NADH dehydrogenase I, E subunit; n=2; D... 56 2e-06
UniRef50_Q98BW7 Cluster: NAD-dependent formate dehydrogenase gam... 55 2e-06
UniRef50_Q2FP98 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 55 2e-06
UniRef50_Q0AVX7 Cluster: Fe-hydrogenase, gamma subunit; n=4; Syn... 55 3e-06
UniRef50_A0LLS9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 55 3e-06
UniRef50_A0LJN9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 55 3e-06
UniRef50_A0LGJ1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 55 3e-06
UniRef50_Q4AHT8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 54 3e-06
UniRef50_Q0PIE2 Cluster: NAD(P)H-quinone oxidoreductase 24 kDa s... 54 5e-06
UniRef50_Q6SGN4 Cluster: NADH-quinone oxidoreductase, E subunit;... 54 6e-06
UniRef50_A6PPY8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 54 6e-06
UniRef50_A1ALP3 Cluster: NADH-quinone oxidoreductase, E subunit;... 54 6e-06
UniRef50_A7IL17 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa ... 53 1e-05
UniRef50_O13691 Cluster: Probable NADH-ubiquinone oxidoreductase... 53 1e-05
UniRef50_Q6N1Z1 Cluster: NADH-ubiquinone dehydrogenase chain E; ... 52 1e-05
UniRef50_Q7NZH7 Cluster: NADH-ubiquinone oxidoreductase, chain E... 52 2e-05
UniRef50_A0J5R7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 52 2e-05
UniRef50_Q749M0 Cluster: NAD-reducing hydrogenase, putative; n=4... 52 2e-05
UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=... 52 2e-05
UniRef50_A4M6K3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 51 3e-05
UniRef50_Q89QJ0 Cluster: NADH dehydrogenase I chain E; n=16; Alp... 51 4e-05
UniRef50_O66842 Cluster: NADH-quinone oxidoreductase subunit E; ... 51 4e-05
UniRef50_Q2C5T5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 50 6e-05
UniRef50_A0QNT7 Cluster: Formate dehydrogenase, gamma subunit; n... 50 6e-05
UniRef50_Q835I9 Cluster: NAD-dependent formate dehydrogenase, ga... 50 7e-05
UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 50 1e-04
UniRef50_A1FMP2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 50 1e-04
UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreducta... 49 1e-04
UniRef50_Q74GA4 Cluster: NADH dehydrogenase I, E subunit; n=6; G... 49 1e-04
UniRef50_A1AP34 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 49 1e-04
UniRef50_Q47WZ1 Cluster: Formate dehydrogenase, gamma subunit; n... 48 2e-04
UniRef50_A3DCI7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 48 2e-04
UniRef50_A3YBB2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 48 4e-04
UniRef50_Q608U6 Cluster: Formate dehydrogenase, gamma subunit; n... 47 5e-04
UniRef50_A5V6C3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 47 5e-04
UniRef50_Q28P85 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa ... 47 7e-04
UniRef50_A3Z0U6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 47 7e-04
UniRef50_UPI0000E87F9D Cluster: ATP synthase subunit E; n=1; Met... 46 0.001
UniRef50_Q483I3 Cluster: Formate dehydrogenase, gamma subunit; n... 46 0.001
UniRef50_Q057X2 Cluster: NADH dehydrogenase I chain E; n=1; Buch... 45 0.002
UniRef50_A3JB74 Cluster: ATP synthase subunit E; n=1; Marinobact... 45 0.003
UniRef50_A0RMD2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kD... 44 0.005
UniRef50_Q63RZ3 Cluster: NAD-dependent formate dehydrogenase gam... 44 0.006
UniRef50_Q0AL75 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 44 0.006
UniRef50_A6PMG8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 43 0.009
UniRef50_Q2S5I9 Cluster: NADH-ubiquinone oxidoreductase 24 kDa s... 43 0.011
UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=... 41 0.035
UniRef50_A4XP94 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 41 0.035
UniRef50_A6VXL9 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa ... 40 0.060
UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 37 0.74
UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 36 0.98
UniRef50_Q2Z141 Cluster: Putative ATP-dependent DNA helicase; n=... 36 0.98
UniRef50_A7PC77 Cluster: Chromosome chr2 scaffold_11, whole geno... 36 1.7
UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;... 35 2.3
UniRef50_A5ALP4 Cluster: Putative uncharacterized protein; n=1; ... 35 3.0
UniRef50_UPI0000E4767A Cluster: PREDICTED: hypothetical protein;... 34 4.0
UniRef50_UPI00003C0AF2 Cluster: PREDICTED: similar to Bone morph... 34 4.0
UniRef50_Q0LHA0 Cluster: Peptidase S9, prolyl oligopeptidase act... 34 4.0
UniRef50_A6F4P8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.3
UniRef50_A6ET12 Cluster: Peptidase S41; n=1; unidentified eubact... 34 5.3
UniRef50_UPI0000DB7708 Cluster: PREDICTED: similar to Calmodulin... 33 6.9
UniRef50_Q8IS76 Cluster: Putative uncharacterized protein; n=1; ... 33 6.9
UniRef50_UPI0000E21DF9 Cluster: PREDICTED: hypothetical protein;... 33 9.2
UniRef50_UPI0000D5799D Cluster: PREDICTED: similar to CG3696-PA,... 33 9.2
UniRef50_A7CJ39 Cluster: Putative uncharacterized protein; n=1; ... 33 9.2
UniRef50_A2DWG3 Cluster: Legume-like lectin family protein; n=2;... 33 9.2
UniRef50_Q4WTX7 Cluster: C6 finger domain protein, putative; n=1... 33 9.2
>UniRef50_P19404 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 2, mitochondrial precursor; n=64; cellular
organisms|Rep: NADH dehydrogenase [ubiquinone]
flavoprotein 2, mitochondrial precursor - Homo sapiens
(Human)
Length = 249
Score = 132 bits (318), Expect = 1e-29
Identities = 61/104 (58%), Positives = 80/104 (76%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
K V + P + A++P+LDLAQRQ+G WLPISAM+KVAE+L +P MRVYEVATFY
Sbjct: 61 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFY 119
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
TM+ R+P+GKYH+QVCTTTPC LR SD+IL AI+++ ++ T
Sbjct: 120 TMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGET 163
Score = 126 bits (305), Expect = 5e-28
Identities = 56/84 (66%), Positives = 68/84 (80%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPR 690
VG +P F++ EVECLGACVNAPM+Q+ND+YYEDL+ +D +EII +LK + PKPGPR
Sbjct: 160 VGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPR 219
Query: 691 SGRFASEPLGGLTSLTEEPTGPGF 762
SGRF+ EP GGLTSLTE P GPGF
Sbjct: 220 SGRFSCEPAGGLTSLTEPPKGPGF 243
Score = 60.9 bits (141), Expect = 4e-08
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +3
Query: 57 LSSLRTGVQGLWRISSRSIQTTASRQH--DSLFVHRDTPEDNPSIPFEFSQANQKRVEXL 230
L + G+ W R++ T + +LFVHRDTPE+NP PF+F+ N KR+E +
Sbjct: 7 LRARAAGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAI 66
Query: 231 LAIYPEGH 254
+ YPEGH
Sbjct: 67 VKNYPEGH 74
>UniRef50_Q4UM09 Cluster: NADH-quinone oxidoreductase subunit E;
n=18; Alphaproteobacteria|Rep: NADH-quinone
oxidoreductase subunit E - Rickettsia felis (Rickettsia
azadi)
Length = 167
Score = 126 bits (304), Expect = 7e-28
Identities = 54/105 (51%), Positives = 74/105 (70%)
Frame = +2
Query: 242 P*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGK 421
P +R A++PLLDLAQRQ+GGWLP+ A+ VA +L +P MR YEVATFY+MF + +GK
Sbjct: 23 PPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYMRAYEVATFYSMFNLKRVGK 82
Query: 422 YHVQVCTTTPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQRL 556
YH+QVCTTTPCWL GSD I+ +++ +L+ T + F +
Sbjct: 83 YHIQVCTTTPCWLHGSDDIMKICEKKLGIKLKETTEDQKFTLSEI 127
Score = 68.5 bits (160), Expect = 2e-10
Identities = 27/46 (58%), Positives = 38/46 (82%)
Frame = +1
Query: 535 KFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEK 672
KF++SE+ECLGACVNAP++Q+NDDYYEDL+ E +++I + D K
Sbjct: 121 KFTLSEIECLGACVNAPVVQINDDYYEDLTEEKMEKLIDEYSNDFK 166
>UniRef50_Q2GDD2 Cluster: NADH dehydrogenase I, E subunit; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: NADH
dehydrogenase I, E subunit - Neorickettsia sennetsu
(strain Miyayama)
Length = 181
Score = 113 bits (273), Expect = 4e-24
Identities = 49/102 (48%), Positives = 71/102 (69%)
Frame = +2
Query: 209 SKESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATF 388
S+E + P +R A++PLL L QRQ W+PI+AM VA++L LP ++VYEVA+F
Sbjct: 31 SREVARILAKYPASRKRSAVLPLLHLVQRQHENWIPIAAMDHVAQLLGLPVIKVYEVASF 90
Query: 389 YTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCRL 514
Y+MF P+GK+ ++VC TTPCWLRGSD ++ A K+E ++
Sbjct: 91 YSMFNTAPVGKHTIRVCRTTPCWLRGSDCLIEAAKRELGIKV 132
Score = 64.9 bits (151), Expect = 2e-09
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
VG + KFS+ EVECLGACV+AP++Q+NDDY+E+L E++S+LK
Sbjct: 132 VGHKTEDNKFSLDEVECLGACVSAPVVQINDDYFENLDERSFLELLSRLK 181
>UniRef50_O22769 Cluster: NADH-ubiquinone oxidoreductase 24 kDa
subunit, mitochondrial precursor; n=8;
Viridiplantae|Rep: NADH-ubiquinone oxidoreductase 24 kDa
subunit, mitochondrial precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 255
Score = 112 bits (269), Expect = 1e-23
Identities = 52/97 (53%), Positives = 73/97 (75%)
Frame = +2
Query: 200 AGQSKESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEV 379
A QSK + + + P ++ A+IPLLDLAQ+Q+GGWLP+SAM+ VA+++ + +RVYEV
Sbjct: 52 ANQSKV-KEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEV 110
Query: 380 ATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAI 490
ATFY+MF R +GKYH+ VC TTPC +RGS I +A+
Sbjct: 111 ATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRDIESAL 147
Score = 67.3 bits (157), Expect = 5e-10
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVND----------DYYEDLSVEDTKEIISKLKKDEKPKP 681
G FSV E+EC+G CVNAPMI V D +Y+ED++ E EI+ KL+K EKP
Sbjct: 162 GLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPH 221
Query: 682 GPRS-GRFASEPLGGLTSLTEEPTGPGF 762
G ++ R P GG +L EP P F
Sbjct: 222 GTQNPKRIKCGPEGGNKTLLGEPKPPQF 249
Score = 45.6 bits (103), Expect = 0.002
Identities = 16/40 (40%), Positives = 29/40 (72%)
Frame = +3
Query: 141 SLFVHRDTPEDNPSIPFEFSQANQKRVEXLLAIYPEGHSE 260
+L H D+P++ P +P+EFS+ANQ +V+ +L+ YP + +
Sbjct: 31 ALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQ 70
>UniRef50_Q5ACX6 Cluster: Potential mitochondrial Complex I,
NUHM_24kd subunit; n=5; Saccharomycetales|Rep: Potential
mitochondrial Complex I, NUHM_24kd subunit - Candida
albicans (Yeast)
Length = 243
Score = 109 bits (263), Expect = 7e-23
Identities = 52/93 (55%), Positives = 70/93 (75%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
K + + P + ++GA +PLLDL QRQ G + IS M+ VA++L++P MRVYEVATFY
Sbjct: 52 KRAEEIIAKYPPQYKKGACMPLLDLGQRQLG-FTSISVMNYVAKLLDMPPMRVYEVATFY 110
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAI 490
TM+ R P+GKY++QVCTTTPC L GSD+I+ AI
Sbjct: 111 TMYNRHPMGKYNLQVCTTTPCQLCGSDSIMKAI 143
Score = 71.3 bits (167), Expect = 3e-11
Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Frame = +1
Query: 502 KL*VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKK-DEKPK 678
K+ G +P F++ EVECLGACVNAPMI +NDDY+EDLS E T ++ +L++ E +
Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLSPEATINLLKQLQEGKELTE 207
Query: 679 PGPRSG-RFASEPLGG-LTSLTEEP 747
GP G R + EP G L +EP
Sbjct: 208 IGPVDGKRQSCEPFSGPKVLLNKEP 232
Score = 53.2 bits (122), Expect = 8e-06
Identities = 23/44 (52%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +3
Query: 117 TTASRQHDSLF-VHRDTPEDNPSIPFEFSQANQKRVEXLLAIYP 245
+T S+++ S+ VHRDT EDNP+I FEF+ N+KR E ++A YP
Sbjct: 19 STVSKRYSSIISVHRDTKEDNPNIAFEFNSENKKRAEEIIAKYP 62
>UniRef50_Q9UUT9 Cluster: Subunit NUHM of protein NADH:Ubiquinone
Oxidoreductase; n=3; Fungi/Metazoa group|Rep: Subunit
NUHM of protein NADH:Ubiquinone Oxidoreductase -
Yarrowia lipolytica (Candida lipolytica)
Length = 243
Score = 109 bits (262), Expect = 9e-23
Identities = 49/100 (49%), Positives = 71/100 (71%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
K + + P + ++ A++PLLD+ QRQ G + IS M+ VA++L +P MRVYEVATFY
Sbjct: 53 KRAEEVIAKYPPQYKKAAVMPLLDIGQRQLG-YTSISVMNYVAKLLEMPPMRVYEVATFY 111
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCR 511
TM+ R P+G+YH+Q+CTTTPC L GSD I+ A++ N +
Sbjct: 112 TMYNRTPMGRYHLQICTTTPCQLCGSDGIMEAVQNTLNIK 151
Score = 76.2 bits (179), Expect = 1e-12
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Frame = +1
Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRSG-RFASEP 714
F++SEVECLGACVNAPM+ +NDDYYEDL+ E T +++ K + P PGP + R EP
Sbjct: 161 FTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAGKMPTPGPENHVRRDCEP 220
Query: 715 LGG-LTSLTEEP 747
G L++EP
Sbjct: 221 ASGQKVLLSKEP 232
Score = 55.2 bits (127), Expect = 2e-06
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = +3
Query: 54 MLSSLRTGVQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEXLL 233
ML +R + L R ++R+ Q +R H + VHR+T +NPSIPFEFS N KR E ++
Sbjct: 1 MLRLIRPRLAALARPTTRAPQALNARTH-IVSVHRNTENNNPSIPFEFSPENMKRAEEVI 59
Query: 234 AIYP 245
A YP
Sbjct: 60 AKYP 63
>UniRef50_A5CES4 Cluster: NADH dehydrogenase I chain E; n=1;
Orientia tsutsugamushi Boryong|Rep: NADH dehydrogenase I
chain E - Orientia tsutsugamushi (strain Boryong)
(Rickettsia tsutsugamushi)
Length = 192
Score = 108 bits (260), Expect = 2e-22
Identities = 44/93 (47%), Positives = 66/93 (70%)
Frame = +2
Query: 218 SRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTM 397
++ + + P + A++ +LDLAQ Q+ WL S + VA +L +P ++VYE+A+FYTM
Sbjct: 19 AKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVANLLKMPYIKVYEIASFYTM 78
Query: 398 FIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQ 496
F +P+GKYH+Q+C TTPCWLRGSD I+N K+
Sbjct: 79 FNLQPVGKYHIQICGTTPCWLRGSDDIMNFCKK 111
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +1
Query: 502 KL*VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPK 678
K+ G S F+VSE ECLGAC NAP++Q+N DYYE+L+ + KEII+ L + K
Sbjct: 114 KIETGKTSQDKLFTVSETECLGACRNAPVVQINHDYYENLTNDKIKEIINNLHAKDLQK 172
>UniRef50_Q6V9B3 Cluster: NADH:ubiquinone oxidoreductase 24 kD
subunit; n=2; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase 24 kD subunit - Chlamydomonas reinhardtii
Length = 282
Score = 107 bits (258), Expect = 3e-22
Identities = 47/87 (54%), Positives = 67/87 (77%)
Frame = +2
Query: 230 VGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRR 409
+ P ++ A+IP+LD+ Q+++GGWL ++AM++VA++L++ +RVYEVATFYTMF R
Sbjct: 77 IARYPPNYKQSAIIPVLDVTQQENGGWLSLAAMNRVAKLLDMAPIRVYEVATFYTMFNRT 136
Query: 410 PIGKYHVQVCTTTPCWLRGSDAILNAI 490
IGKYHVQ+C TTPC L+GS I AI
Sbjct: 137 KIGKYHVQICGTTPCRLQGSQKIEEAI 163
Score = 62.9 bits (146), Expect = 1e-08
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 10/82 (12%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVND----------DYYEDLSVEDTKEIISKLK 660
+G + G F++ E+EC+GACVNAPM+ + D YYEDL+ +D I+ +K
Sbjct: 171 IGQTTQDGLFTLGEMECMGACVNAPMVAIADYTKGVSGFEYIYYEDLTPKDIVNILDTIK 230
Query: 661 KDEKPKPGPRSGRFASEPLGGL 726
K KPKPG + R +EP G +
Sbjct: 231 KGGKPKPGSQY-RLKAEPAGAV 251
Score = 43.2 bits (97), Expect = 0.009
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 123 ASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEXLLAIYPEGHSE 260
A+ D +H+DTPE+N + FEFS+A K V ++A YP + +
Sbjct: 41 ATNSTDIFNIHKDTPENNAATSFEFSEATLKVVNDIIARYPPNYKQ 86
>UniRef50_Q1GTK2 Cluster: NADH-quinone oxidoreductase, E subunit;
n=8; Alphaproteobacteria|Rep: NADH-quinone
oxidoreductase, E subunit - Sphingopyxis alaskensis
(Sphingomonas alaskensis)
Length = 222
Score = 106 bits (254), Expect = 8e-22
Identities = 52/104 (50%), Positives = 69/104 (66%), Gaps = 6/104 (5%)
Frame = +2
Query: 200 AGQSKESRXFVGHLP*RSQRGAMIPLLDLAQRQSG------GWLPISAMHKVAEILNLPK 361
A +++++ + P QR A++PLLDLAQRQ G GWLP+ + VA L++P
Sbjct: 24 AENAEKAKAVIARYPAGRQRSAVMPLLDLAQRQVGAETQTQGWLPVPVIEYVAAQLDMPF 83
Query: 362 MRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIK 493
+R YEVATFYTM+ P+G+YHVQVC TTPC LRGSD + A K
Sbjct: 84 IRAYEVATFYTMYNLAPVGRYHVQVCGTTPCLLRGSDDVTAACK 127
Score = 80.6 bits (190), Expect = 5e-14
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRS 693
G +P G F++SEVEC+G C NAPM+Q+NDD YEDL + I+ +L ++PK G ++
Sbjct: 134 GKTTPDGLFTLSEVECMGTCANAPMVQINDDNYEDLDYDSMTRILDELAAGKQPKTGTQN 193
Query: 694 -GRFASEPLGGLTSLTE 741
R SEP GG T+L E
Sbjct: 194 PRRHTSEPEGGPTTLKE 210
>UniRef50_Q4QEG7 Cluster: NADH-ubiquinone oxidoreductase,
mitochondrial, putative; n=6; Trypanosomatidae|Rep:
NADH-ubiquinone oxidoreductase, mitochondrial, putative
- Leishmania major
Length = 273
Score = 106 bits (254), Expect = 8e-22
Identities = 44/87 (50%), Positives = 61/87 (70%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A IPLL LAQ+Q GG++P++AM+K+A+I +P M V+E TFY+MF R P+GKYH+Q C
Sbjct: 78 ATIPLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMFNRHPVGKYHIQFCR 137
Query: 443 TTPCWLRGSDAILNAIKQETNCRLEAT 523
TTPC L G+D ++ N R+ T
Sbjct: 138 TTPCMLCGADELMERTMHYLNVRMHGT 164
Score = 63.3 bits (147), Expect = 7e-09
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Frame = +1
Query: 517 GNSPCGKFSVSEVECLGACVNAPMIQVND---------DYYEDLSVEDTKEIISKLKKDE 669
G + G ++ E+ECLGACVNAPM+ V+D DY EDL+ E K ++ L+ +
Sbjct: 163 GTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENLRGGK 222
Query: 670 KPKPG-PRSGRFASEPLGGLTSLT-EEPTGP 756
K G R R +EP GG TSL +EP GP
Sbjct: 223 PFKIGSQRLDRRYAEPAGGRTSLLFKEPPGP 253
>UniRef50_Q54F10 Cluster: NADH dehydrogenase; n=1; Dictyostelium
discoideum AX4|Rep: NADH dehydrogenase - Dictyostelium
discoideum AX4
Length = 247
Score = 105 bits (251), Expect = 2e-21
Identities = 50/94 (53%), Positives = 63/94 (67%)
Frame = +2
Query: 242 P*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGK 421
P + ++ A+IPLLDLAQRQ+GGW+ + AM KVA I + M YEVA+FYTMF R IG+
Sbjct: 70 PKQYRQSALIPLLDLAQRQNGGWISLRAMDKVAHICGIAPMTAYEVASFYTMFNRTKIGE 129
Query: 422 YHVQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
VQVCTTTPC LRGS I+ K ++ T
Sbjct: 130 NFVQVCTTTPCMLRGSGEIIKTCKSHLGIQVGET 163
Score = 88.2 bits (209), Expect = 2e-16
Identities = 40/82 (48%), Positives = 57/82 (69%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPR 690
VG +P KF++ EVECLGACVNAPM+ +NDD+YEDL+ T ++ ++K ++ K GP+
Sbjct: 160 VGETTPDNKFTLVEVECLGACVNAPMMCINDDFYEDLTSASTINLLDQIKNNKPTKIGPQ 219
Query: 691 SGRFASEPLGGLTSLTEEPTGP 756
+ R A+E G T+L E P GP
Sbjct: 220 THRKAAEGPQGKTTLLEPPVGP 241
Score = 39.9 bits (89), Expect = 0.080
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +3
Query: 114 QTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEXLLAIYPEGHSE 260
Q+T +R D+L H +T ++N PF+F+Q N +VE +LA YP+ + +
Sbjct: 28 QSTLTRS-DALSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQ 75
>UniRef50_Q0BSK6 Cluster: NADH-quinone oxidoreductase chain E; n=5;
Rhodospirillales|Rep: NADH-quinone oxidoreductase chain
E - Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 227
Score = 103 bits (248), Expect = 4e-21
Identities = 47/92 (51%), Positives = 65/92 (70%), Gaps = 5/92 (5%)
Frame = +2
Query: 242 P*RSQRGAMIPLLDLAQRQSG-----GWLPISAMHKVAEILNLPKMRVYEVATFYTMFIR 406
P + A++PLLDLAQRQ G W+P +AM ++A L + +RVYEVATFY M+
Sbjct: 38 PPARRASAVMPLLDLAQRQMGRETGSAWIPRAAMDEIARRLGMAPIRVYEVATFYFMYNT 97
Query: 407 RPIGKYHVQVCTTTPCWLRGSDAILNAIKQET 502
RP+G++H+Q+CTTTPCWLRGSD ++ A + T
Sbjct: 98 RPVGRHHLQLCTTTPCWLRGSDEVVAACRSAT 129
Score = 88.2 bits (209), Expect = 2e-16
Identities = 40/79 (50%), Positives = 55/79 (69%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRS 693
G S G F+++EVECLGACVNAP++QV+DDYYED+ T ++ L++ E+P PG S
Sbjct: 135 GETSEDGMFTMTEVECLGACVNAPILQVDDDYYEDMDGPRTLVLLEALRRGERPTPGSMS 194
Query: 694 GRFASEPLGGLTSLTEEPT 750
GR S P GG T+L + P+
Sbjct: 195 GRQNSAPEGGPTTLRDVPS 213
>UniRef50_A3U1M2 Cluster: ATP synthase subunit E; n=9;
Alphaproteobacteria|Rep: ATP synthase subunit E -
Oceanicola batsensis HTCC2597
Length = 460
Score = 101 bits (243), Expect = 2e-20
Identities = 45/74 (60%), Positives = 57/74 (77%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRSGRFASE 711
GKFS EVECLGAC NAPM Q+ DYYEDL+ E +EI+ +L + + P PGP++GR+A+E
Sbjct: 128 GKFSWEEVECLGACANAPMAQIGKDYYEDLTAERLREILGELAEGKVPVPGPQNGRYAAE 187
Query: 712 PLGGLTSLTEEPTG 753
PL GLTSLTE +G
Sbjct: 188 PLKGLTSLTEYDSG 201
Score = 66.9 bits (156), Expect = 6e-10
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKY-HV 430
Q A+IPLL AQ Q G WL A+ +A +L++ +R EVATFY MF P+G HV
Sbjct: 35 QASAIIPLLWRAQEQEG-WLTRPAIEHIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHV 93
Query: 431 QVCTTTPCWLRGSDAILNAIKQE 499
Q+C TT C + G++ ++ A+ QE
Sbjct: 94 QICGTTSCMICGAEDLI-AVCQE 115
>UniRef50_A0E600 Cluster: Chromosome undetermined scaffold_8, whole
genome shotgun sequence; n=5; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_8, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 263
Score = 100 bits (240), Expect = 4e-20
Identities = 46/100 (46%), Positives = 67/100 (67%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
K+ + P ++ IPLL LAQ+Q+ +L +SAM K+A+IL +P+M VYE A+FY
Sbjct: 44 KKIEAILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMKKIAKILEIPEMDVYETASFY 103
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCR 511
+MF R +GK+H+QVC TTPC L GS I+ I+Q+ N +
Sbjct: 104 SMFNRERVGKFHLQVCGTTPCQLCGSKDIIKTIEQKLNIK 143
Score = 68.1 bits (159), Expect = 3e-10
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDY-YEDLSVEDTKEIISKLKKDEKPKPGPR 690
G + G +++ EVECLGAC NAPM+QVN+++ YEDL+ E+T +++ L K+ K GP+
Sbjct: 145 GETTADGLYTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDL-KNGTDKKGPQ 203
Query: 691 SGRFASEPLGGLTSLTEEPTGPGFEY 768
+GR +E G T+L T +Y
Sbjct: 204 NGRKNAEGPQGRTTLQNIATQQDIKY 229
Score = 38.3 bits (85), Expect = 0.24
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 114 QTTASRQHDSLFV-HRDTPEDNPSIPFEFSQANQKRVEXLLAIYPEGHSE 260
Q + ++ ++FV HR+ +++ S+PF+F+ N K++E +LA +P +
Sbjct: 10 QRKSIQRFSNIFVAHRNRDDNSDSVPFDFTDENYKKIEAILAKFPSNEKK 59
>UniRef50_Q2TZN8 Cluster: NADH:ubiquinone oxidoreductase; n=11;
Pezizomycotina|Rep: NADH:ubiquinone oxidoreductase -
Aspergillus oryzae
Length = 270
Score = 100 bits (239), Expect = 5e-20
Identities = 50/87 (57%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Frame = +2
Query: 242 P*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGK 421
P + ++ A++PLLDL QRQ G + IS M++VA +L +P MRVYEVATFYTM+ R P+GK
Sbjct: 72 PPQYKKAAVMPLLDLGQRQHG-FTSISVMNEVARLLEMPPMRVYEVATFYTMYNREPVGK 130
Query: 422 YHVQVCTTTPCWLR--GSDAILNAIKQ 496
Y VQ+CTTTPC L GS IL AI++
Sbjct: 131 YFVQLCTTTPCQLGGCGSTKILEAIQE 157
Score = 80.2 bits (189), Expect = 6e-14
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 10/84 (11%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKD--------- 666
G + G F++ EVECLGACVNAPM+Q+NDDYYEDL+ E K +++ LK+
Sbjct: 164 GHTTEDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPESMKTLLTALKESATATDAGKT 223
Query: 667 -EKPKPGPRSGRFASEPLGGLTSL 735
+ P PGP SGR E GLT+L
Sbjct: 224 VQIPAPGPMSGRNTCENSAGLTNL 247
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +3
Query: 105 RSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEXLLAIYP 245
R R DSL VHR+ P +NPSIPF F++ NQ+ ++ +L YP
Sbjct: 26 RPFSAGPQRCSDSLSVHRNKPTNNPSIPFTFNEQNQRLIDEILKRYP 72
>UniRef50_Q9VVF0 Cluster: CG6485-PA; n=2; Sophophora|Rep: CG6485-PA
- Drosophila melanogaster (Fruit fly)
Length = 238
Score = 99.1 bits (236), Expect = 1e-19
Identities = 46/83 (55%), Positives = 57/83 (68%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
+GA++PLLD+AQRQ G WL ISA+ VAE + + M +E A FYTMF +P GKY V V
Sbjct: 57 KGALLPLLDIAQRQQG-WLSISAVQAVAETIKIDPMEAFEAAQFYTMFFMKPRGKYVVSV 115
Query: 437 CTTTPCWLRGSDAILNAIKQETN 505
CT+TPC LRG D I A K+ N
Sbjct: 116 CTSTPCKLRGGDEIFEACKKTLN 138
Score = 97.1 bits (231), Expect = 5e-19
Identities = 43/83 (51%), Positives = 58/83 (69%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRS 693
G +P +F++ E C+GACVNAP++ VNDD YEDL + I++ L+ D+ P GPR+
Sbjct: 142 GQTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDKLPPAGPRN 201
Query: 694 GRFASEPLGGLTSLTEEPTGPGF 762
GRFASEP GGLT+L +P PGF
Sbjct: 202 GRFASEPKGGLTTLKIQPPPPGF 224
>UniRef50_Q00RX3 Cluster: Putative NADH-ubiquinone oxidoreductase;
n=1; Ostreococcus tauri|Rep: Putative NADH-ubiquinone
oxidoreductase - Ostreococcus tauri
Length = 265
Score = 98.7 bits (235), Expect = 2e-19
Identities = 46/85 (54%), Positives = 63/85 (74%)
Frame = +2
Query: 242 P*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGK 421
P +R AMIPLLDLAQ+Q+ G L ++ M+ +A++L + +RVYEVATFY+MF R+ +GK
Sbjct: 57 PSNYKRSAMIPLLDLAQQQNKGHLTLAMMNHIADVLEVAPIRVYEVATFYSMFNRQKMGK 116
Query: 422 YHVQVCTTTPCWLRGSDAILNAIKQ 496
HV VC TTPC LRGS I A+++
Sbjct: 117 LHVMVCGTTPCMLRGSREIEKALEE 141
Score = 70.5 bits (165), Expect = 5e-11
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 10/86 (11%)
Frame = +1
Query: 529 CGKFSVSEVECLGACVNAPMIQVND----------DYYEDLSVEDTKEIISKLKKDEKPK 678
CG F++ E+EC+G CVNAPMI V D +YYEDL+ + ++ LK + P+
Sbjct: 153 CGTFTLGEMECMGCCVNAPMIAVADYRNGVEGYSYNYYEDLTPQTAVKVCEALKAGKSPR 212
Query: 679 PGPRSGRFASEPLGGLTSLTEEPTGP 756
G + R +EP+ GLT+LT +P+GP
Sbjct: 213 VGSQI-RDKAEPIKGLTTLTGDPSGP 237
Score = 34.3 bits (75), Expect = 4.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 150 VHRDTPEDNPSIPFEFSQANQKRVEXLLAIYPEGH 254
VHRD PEDN ++ + F + + +V+ +L YP +
Sbjct: 26 VHRDVPEDNSTMTWTFEASVRPKVDAILRRYPSNY 60
>UniRef50_Q5FGV2 Cluster: NADH-quinone oxidoreductase chain E; n=5;
canis group|Rep: NADH-quinone oxidoreductase chain E -
Ehrlichia ruminantium (strain Gardel)
Length = 183
Score = 97.5 bits (232), Expect = 4e-19
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
K++ + P + A++PLL +AQ+Q GG +PI+AM+ +A+ L++ + VYEVA FY
Sbjct: 26 KQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAAMNYIADFLDMKPIHVYEVAKFY 85
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETN 505
+M+ GKY VQVC TTPCWL GSD +L A K+ N
Sbjct: 86 SMYNLSVTGKYLVQVCRTTPCWLCGSDNVLKACKEFLN 123
Score = 67.3 bits (157), Expect = 5e-10
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE 669
VG + F++ EVECLGACVNAP++Q+NDDYYE L+ + K I+ + KK E
Sbjct: 126 VGNTTDDNLFTLKEVECLGACVNAPVVQINDDYYEKLNADKIKNILMEYKKKE 178
>UniRef50_Q83BQ9 Cluster: NADH dehydrogenase I, E subunit; n=3;
Coxiella burnetii|Rep: NADH dehydrogenase I, E subunit -
Coxiella burnetii
Length = 174
Score = 93.9 bits (223), Expect = 5e-18
Identities = 41/104 (39%), Positives = 65/104 (62%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
KE ++ P +R A++P L Q+Q+ GWL +AM+ +A+ L LP++ VYEVATFY
Sbjct: 16 KEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQLPRIWVYEVATFY 75
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
M+ +P+GK+ + +C PC+LRGSD I+ +K+ + T
Sbjct: 76 DMYNLKPMGKHKISICQNVPCFLRGSDEIVACVKERLGIDFDET 119
Score = 47.2 bits (107), Expect = 5e-04
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVND-DYYEDLSVEDTKEIISKLKKDEK 672
G F++ VEC+ AC APM Q++D +Y+E+L+ E II KL+++ K
Sbjct: 123 GLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKLERESK 170
>UniRef50_A5NY87 Cluster: NADH-quinone oxidoreductase, E subunit;
n=1; Methylobacterium sp. 4-46|Rep: NADH-quinone
oxidoreductase, E subunit - Methylobacterium sp. 4-46
Length = 394
Score = 88.2 bits (209), Expect = 2e-16
Identities = 41/80 (51%), Positives = 53/80 (66%)
Frame = +2
Query: 230 VGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRR 409
+ P Q A+IPLL AQ Q+GGWLP A+ VA+ L +P +RV EVATFYTMF
Sbjct: 30 IAKYPEGRQASAVIPLLWRAQEQNGGWLPQKAIEAVADELGMPHIRVLEVATFYTMFALE 89
Query: 410 PIGKYHVQVCTTTPCWLRGS 469
P+G+Y +QVC T PC + G+
Sbjct: 90 PVGRYWIQVCGTVPCDVCGA 109
Score = 85.0 bits (201), Expect = 2e-15
Identities = 43/91 (47%), Positives = 53/91 (58%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRS 693
G SP G FS EVECLGAC NAPM+Q+N DYYEDL+ E ++ L K G ++
Sbjct: 124 GHVSPDGNFSWLEVECLGACCNAPMVQINQDYYEDLTPEILGRLMDDLAAGRPVKAGSQA 183
Query: 694 GRFASEPLGGLTSLTEEPTGPGFEYKTHSRR 786
GR +SEP G T+LT+E G RR
Sbjct: 184 GRTSSEPKGAATTLTDETLFDGSRIGAWRRR 214
>UniRef50_P29914 Cluster: NADH-quinone oxidoreductase chain 2; n=22;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase
chain 2 - Paracoccus denitrificans
Length = 239
Score = 88.2 bits (209), Expect = 2e-16
Identities = 38/70 (54%), Positives = 50/70 (71%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRSGRFASE 711
G+FS EVECLGAC NAPM Q+ D+YEDL+VE +I + E P PGP++GRF++E
Sbjct: 128 GRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPVPGPQNGRFSAE 187
Query: 712 PLGGLTSLTE 741
LGG T+L +
Sbjct: 188 ALGGPTALAD 197
Score = 70.9 bits (166), Expect = 4e-11
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKY-HV 430
Q+ A+IP+L AQ Q G WL A+ A++L +P +R EVATFY MF +P+G H+
Sbjct: 35 QQSAIIPVLWRAQEQEG-WLSRPAIEYCADLLGMPYIRALEVATFYFMFQLQPVGSVAHI 93
Query: 431 QVCTTTPCWLRGSDAILNAIKQE 499
Q+C TT C + G++ ++ K++
Sbjct: 94 QICGTTTCMICGAEDLIRVCKEK 116
>UniRef50_Q8G1B3 Cluster: NADH dehydrogenase I, E subunit; n=9;
Rhizobiales|Rep: NADH dehydrogenase I, E subunit -
Brucella suis
Length = 237
Score = 87.0 bits (206), Expect = 5e-16
Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Frame = +2
Query: 230 VGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRR 409
+ P Q+ A+IPLL AQ Q G W+ +++ VA +LN+P +RV EVATFYT F +
Sbjct: 30 IAKYPEGRQQSAVIPLLMRAQEQEG-WVTKASIEYVAAMLNMPLIRVLEVATFYTQFQLK 88
Query: 410 PIG-KYHVQVCTTTPCWLRGSDAILNAIKQE 499
P+G + H+QVC TTPC LRGS+A+++ + +
Sbjct: 89 PVGSRAHIQVCGTTPCMLRGSEALMDVCRHK 119
Score = 77.0 bits (181), Expect = 6e-13
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK--KDEKPKPGPRSGRFA 705
G S EVEC GAC NAPM+ + D YEDL+ E EII + K + KPGP+ GR
Sbjct: 131 GTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTIKPGPQDGRVT 190
Query: 706 SEPLGGLTSLTEE 744
SEP GLT+LTE+
Sbjct: 191 SEPASGLTALTED 203
>UniRef50_A7DLV4 Cluster: NADH-quinone oxidoreductase, E subunit;
n=1; Methylobacterium extorquens PA1|Rep: NADH-quinone
oxidoreductase, E subunit - Methylobacterium extorquens
PA1
Length = 412
Score = 87.0 bits (206), Expect = 5e-16
Identities = 40/79 (50%), Positives = 52/79 (65%)
Frame = +2
Query: 218 SRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTM 397
+R + P Q A+IPLL AQ Q+GGWLP A+ VA+ L +P +RV EVATFYTM
Sbjct: 26 ARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQKAIEAVADELGMPHIRVLEVATFYTM 85
Query: 398 FIRRPIGKYHVQVCTTTPC 454
F P+G++ +QVC T PC
Sbjct: 86 FALEPVGRFWIQVCGTVPC 104
Score = 77.8 bits (183), Expect = 3e-13
Identities = 35/71 (49%), Positives = 46/71 (64%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRSGRFASE 711
G FS EVECLGAC NAPM+Q+N DYYEDL+ E +++ L K G + GR +SE
Sbjct: 130 GNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGRPVKVGSQIGRVSSE 189
Query: 712 PLGGLTSLTEE 744
P + +LT+E
Sbjct: 190 PKDAVNTLTDE 200
>UniRef50_Q5DLW2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kDa
subunit; n=1; Nyctotherus ovalis|Rep: Hydrogenosomal
NADH dehydrogenase 24 kDa subunit - Nyctotherus ovalis
Length = 259
Score = 87.0 bits (206), Expect = 5e-16
Identities = 40/94 (42%), Positives = 62/94 (65%)
Frame = +2
Query: 242 P*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGK 421
P ++ A++ LL LAQ+Q+G +L ++AM+KVA+IL + + VYEVA FY+MF R +GK
Sbjct: 59 PDNYKKSAVLYLLHLAQKQNGNFLTLAAMNKVAKILEMTNLNVYEVAAFYSMFNREKVGK 118
Query: 422 YHVQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
+Q+C TTPC L G+ I+ A + ++ T
Sbjct: 119 IRLQICGTTPCLLCGARDIMKACEDHLGIKMGGT 152
Score = 70.5 bits (165), Expect = 5e-11
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDD-YYEDLSVEDTKEIISKLKKDEKPKPGP 687
+GG + G F++ EVECLG C NAPM+QVN++ YEDL+ E E++ K +K E+ K GP
Sbjct: 149 MGGTTKDGMFTLEEVECLGVCANAPMMQVNNEKVYEDLTPEIMPEMLEKFRKGEEIKAGP 208
Query: 688 RS-GRFASE-PLGGLT 729
++ GR +E PLG T
Sbjct: 209 QTKGRKNAEGPLGRTT 224
Score = 36.3 bits (80), Expect = 0.98
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 144 LFVHRDTPEDNPSIPFEFSQANQKRVEXLLAIYPEGHSE 260
L H +TPE+N FEF+ N K + LL YP+ + +
Sbjct: 26 LVTHHETPENNDDTYFEFTPENYKIINSLLKRYPDNYKK 64
>UniRef50_A3UCV4 Cluster: ATP synthase subunit E; n=4;
Alphaproteobacteria|Rep: ATP synthase subunit E -
Oceanicaulis alexandrii HTCC2633
Length = 346
Score = 85.0 bits (201), Expect = 2e-15
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +2
Query: 221 RXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMF 400
+ ++ P + A+IPLL +AQ+Q W+ AM ++A +P +RVYEVATFYTMF
Sbjct: 25 KFWLAKYPEERKASAVIPLLWIAQKQDN-WVSEPAMREIAARCGMPYIRVYEVATFYTMF 83
Query: 401 IRRPIGKYHVQVCTTTPCWLRGSD 472
GK+ +QVC TTPCWLRG+D
Sbjct: 84 NLEQTGKHLIQVCGTTPCWLRGAD 107
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVN----DDYYEDLSVEDTKEIISKLKKDEKPKPGPRSGR 699
G + EVECLGAC NAPM+Q++ D YYEDL+ E ++++ L+ ++ K GP SGR
Sbjct: 129 GMLAWEEVECLGACANAPMVQISNTEGDLYYEDLTAEALEQMLDDLRAGKEVKAGPISGR 188
Query: 700 FASEP 714
SEP
Sbjct: 189 SCSEP 193
>UniRef50_Q98KQ9 Cluster: NADH-ubiquinone dehydrogenase chain E 1;
n=3; Bacteria|Rep: NADH-ubiquinone dehydrogenase chain E
1 - Rhizobium loti (Mesorhizobium loti)
Length = 424
Score = 84.2 bits (199), Expect = 4e-15
Identities = 38/95 (40%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Frame = +2
Query: 218 SRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTM 397
++ ++ P ++ A+IPLL LAQ Q G W+ +A+ ++++L +P++R EVATFYT
Sbjct: 26 AKQWIKKYPKGREQSAIIPLLMLAQEQEG-WVTKAAIETISDMLGMPRIRGLEVATFYTQ 84
Query: 398 FIRRPIG-KYHVQVCTTTPCWLRGSDAILNAIKQE 499
+ P+G + H+QVC TTPC LRGS+A+++ + +
Sbjct: 85 YQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSK 119
Score = 71.7 bits (168), Expect = 2e-11
Identities = 37/73 (50%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIIS--KLKKDEKPKPGPRSGRFA 705
G S EVECLGACVNAPM+ + D +EDL+ E EII K PGP++GR
Sbjct: 131 GTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGASVAPGPQNGRTG 190
Query: 706 SEPLGGLTSLTEE 744
SEP GLT+L E
Sbjct: 191 SEPASGLTTLKSE 203
>UniRef50_A6H1R0 Cluster: NADH dehydrogenase I, E subunit; n=2;
Bacteroidetes|Rep: NADH dehydrogenase I, E subunit -
Flavobacterium psychrophilum (strain JIP02/86 / ATCC
49511)
Length = 176
Score = 82.6 bits (195), Expect = 1e-14
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = +2
Query: 236 HLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPI 415
H P ++ A++P+L Q WL I KVAEIL++ + VYEV +FYTM+ RRPI
Sbjct: 26 HYPEDKRKSALLPVLHEVQDAHENWLSIELQDKVAEILHIKPVEVYEVVSFYTMYNRRPI 85
Query: 416 GKYHVQVCTTTPCWLRGSDAILN 484
GKY + C T+PC L G++ +++
Sbjct: 86 GKYMFEFCQTSPCCLNGTENLMD 108
Score = 43.6 bits (98), Expect = 0.006
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE 669
VG + G F V VECLGAC APM+Q+ D Y E L+ ++I+ K ++
Sbjct: 118 VGEPTADGLFEVRGVECLGACDYAPMMQLGDFYQEHLTEAKIDQLIADCKDNK 170
>UniRef50_Q11VB6 Cluster: NADH dehydrogenase I chain E; n=2;
Bacteroidetes|Rep: NADH dehydrogenase I chain E -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 177
Score = 81.0 bits (191), Expect = 3e-14
Identities = 36/104 (34%), Positives = 60/104 (57%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
K+ + P Q+ A++P+L +AQ + GGWLP M VA +L++ + VYEVA+FY
Sbjct: 16 KKIQEMKARYPEGRQKSALLPVLHMAQDELGGWLPAPLMDYVASLLDITPIEVYEVASFY 75
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
+M+ +P+GK + C T PC L G + ++ + + +L T
Sbjct: 76 SMYNLKPVGKCMFEFCQTGPCCLNGVEELIEYTEDKLGIKLNQT 119
Score = 45.6 bits (103), Expect = 0.002
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEII 648
G+F++ VEC+G+C APM Q+ YYE+L+ E +II
Sbjct: 123 GRFTIKAVECMGSCGTAPMAQIGTYYYENLTKEKIDKII 161
>UniRef50_P56909 Cluster: NADH-quinone oxidoreductase subunit E 1;
n=21; Rhizobiales|Rep: NADH-quinone oxidoreductase
subunit E 1 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 275
Score = 80.2 bits (189), Expect = 6e-14
Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIG-KYHV 430
++ A+IPLL AQ Q G W+ +A+ VA++L + +RV EVATFYT F +P+G + HV
Sbjct: 38 EQSAVIPLLMRAQEQDG-WVTRAAIESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHV 96
Query: 431 QVCTTTPCWLRGSDAILNAIKQE 499
QVC TTPC LRG++ ++ K++
Sbjct: 97 QVCGTTPCMLRGAEDLIKICKKK 119
Score = 68.5 bits (160), Expect = 2e-10
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK--KDEKPKPGPRSGRFA 705
G S EVEC GACVNAPM+ + D +EDL+ E +EII + + K + PGP+ R
Sbjct: 131 GTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEVVPGPQIDRVY 190
Query: 706 SEPLGGLTSL 735
S P+GGLT+L
Sbjct: 191 SAPIGGLTTL 200
>UniRef50_Q9PGJ1 Cluster: NADH-ubiquinone oxidoreductase, NQO2
subunit; n=13; Gammaproteobacteria|Rep: NADH-ubiquinone
oxidoreductase, NQO2 subunit - Xylella fastidiosa
Length = 175
Score = 79.4 bits (187), Expect = 1e-13
Identities = 34/96 (35%), Positives = 59/96 (61%)
Frame = +2
Query: 227 FVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIR 406
++ P +R A++ L AQ Q+ GWL + VA+ L++P + YEVATFY+MF
Sbjct: 30 WLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAYEVATFYSMFET 89
Query: 407 RPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCRL 514
R +G+++V CT CWL G++ +++ +++ C+L
Sbjct: 90 RKVGRHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKL 125
Score = 37.5 bits (83), Expect = 0.43
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 550 EVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
E ECL AC APM+ +N Y+E L+ E +++ L+
Sbjct: 139 EEECLAACAGAPMMVINGHYHERLTKEKVDQLLDGLE 175
>UniRef50_Q0C8X0 Cluster: Putative uncharacterized protein; n=1;
Aspergillus terreus NIH2624|Rep: Putative
uncharacterized protein - Aspergillus terreus (strain
NIH 2624)
Length = 312
Score = 78.2 bits (184), Expect = 2e-13
Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Frame = +1
Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKD-----EKPKPGPRSGRF 702
+++ +ECLGACVNAPM+Q+NDDYYEDL+ E K +++ LK+ + P PGP SGR
Sbjct: 217 YTMYNLECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESSTGSAKVPAPGPLSGRQ 276
Query: 703 ASEPLGGLTSLTEEPTGP 756
E GLT+L + P
Sbjct: 277 TCENSAGLTNLRDPVWDP 294
Score = 62.1 bits (144), Expect = 2e-08
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = +2
Query: 242 P*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMF 400
P + ++ A++P+LDL QRQ G + IS M++VA +L +P MRVYEVATFYTM+
Sbjct: 169 PPQYKKAAVMPILDLGQRQHG-FTSISVMNEVARLLEMPPMRVYEVATFYTMY 220
Score = 48.8 bits (111), Expect = 2e-04
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +3
Query: 69 RTGVQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEXLLAIYP 245
R +Q L + R DSL VHR+ P +NPSIPF+F++ N K ++ +L YP
Sbjct: 111 RQFLQSLPKTQCRPFSAGPQLYSDSLSVHRNKPNNNPSIPFKFNEQNLKLIDEILKRYP 169
>UniRef50_A6FCN2 Cluster: NuoE2 NADH I CHAIN E; n=1; Moritella sp.
PE36|Rep: NuoE2 NADH I CHAIN E - Moritella sp. PE36
Length = 207
Score = 76.2 bits (179), Expect = 1e-12
Identities = 35/81 (43%), Positives = 59/81 (72%)
Frame = +2
Query: 251 SQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHV 430
+QR A++P L LAQ + G+L +A +AEIL++P++ V+E+A+FYT++ + IGKY++
Sbjct: 27 TQRSAIMPALYLAQ-DTYGFLDETAYRAIAEILDIPEIWVFELASFYTLYKNKKIGKYNL 85
Query: 431 QVCTTTPCWLRGSDAILNAIK 493
Q+CT PC LRG+ +L ++
Sbjct: 86 QLCTNVPCMLRGAYDLLGHLQ 106
Score = 45.6 bits (103), Expect = 0.002
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +1
Query: 391 HNVHKTTNW*IPCPSMYDYPLLASRL*CHIECN*TGNKL*VGGNSPCGKFSVSEVECLGA 570
+N+ TN +PC Y LL H++ NK G S G F+++ VEC+G+
Sbjct: 83 YNLQLCTN--VPCMLRGAYDLLG-----HLQTRLGINK---GDTSTDGLFTLTTVECIGS 132
Query: 571 CVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE-KP 675
C AP + VN+ Y+ +LS E +++ +L + KP
Sbjct: 133 CDLAPAMMVNETYHTNLSKERVDKLLDQLSQSSIKP 168
>UniRef50_P56910 Cluster: NADH-quinone oxidoreductase subunit E 2;
n=3; Rhizobiaceae|Rep: NADH-quinone oxidoreductase
subunit E 2 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 168
Score = 75.8 bits (178), Expect = 1e-12
Identities = 35/86 (40%), Positives = 57/86 (66%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQ 433
+R A++P L +AQ++ G LP + +VA+IL + ++ VYE+ATFYT+F PIG++H+Q
Sbjct: 17 RRSAIMPALMIAQKEHGH-LPGPVLEEVAQILGVERVWVYELATFYTLFHTEPIGRFHLQ 75
Query: 434 VCTTTPCWLRGSDAILNAIKQETNCR 511
+C C L GS+A+L ++ R
Sbjct: 76 LCDNVSCMLCGSEALLTHLETTLGIR 101
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEK 672
G +P G F++S VECLGAC AP++QV DDY+ +L ++ + E+
Sbjct: 103 GETTPDGAFTLSTVECLGACEMAPVMQVGDDYHGNLDAARLDALLESFRAAER 155
>UniRef50_Q6MIR6 Cluster: NADH dehydrogenase I chain E; n=1;
Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I
chain E - Bdellovibrio bacteriovorus
Length = 159
Score = 75.4 bits (177), Expect = 2e-12
Identities = 31/89 (34%), Positives = 56/89 (62%)
Frame = +2
Query: 251 SQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHV 430
++ A+IP L +AQ+++ G++ + +++++++P+ R+ EV FYTMF ++P+GKYHV
Sbjct: 23 AKESAIIPSLYIAQKENNGFITPEIIRTLSQVMDIPEARINEVFKFYTMFNQKPVGKYHV 82
Query: 431 QVCTTTPCWLRGSDAILNAIKQETNCRLE 517
QVCT C L G + I E + +
Sbjct: 83 QVCTNISCALEGGREMAKHICHELGVKFD 111
Score = 54.0 bits (124), Expect = 5e-06
Identities = 22/43 (51%), Positives = 32/43 (74%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
G+F+VS+VECLG+C APM+QVND Y+E L+ E ++ +K
Sbjct: 117 GRFTVSKVECLGSCGTAPMMQVNDSYHEKLTPETAMNLLRGMK 159
>UniRef50_Q82TU7 Cluster: Respiratory-chain NADH dehydrogenase 24 Kd
subunit; n=27; Proteobacteria|Rep: Respiratory-chain
NADH dehydrogenase 24 Kd subunit - Nitrosomonas europaea
Length = 162
Score = 73.7 bits (173), Expect = 5e-12
Identities = 35/90 (38%), Positives = 53/90 (58%)
Frame = +2
Query: 230 VGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRR 409
V P ++ A++ L +AQ + G WL M +A+ L +P + VYEVATFY M+ +
Sbjct: 18 VAKYPADRKQSAVMSALAIAQDEKG-WLATETMDFIADYLEMPAIAVYEVATFYNMYNLK 76
Query: 410 PIGKYHVQVCTTTPCWLRGSDAILNAIKQE 499
P+GKY + VCT PC L G + + +KQ+
Sbjct: 77 PVGKYKLTVCTNLPCALSGGNQTADYLKQK 106
>UniRef50_Q0PQQ4 Cluster: NADH dehydrogenase I E subunit; n=1;
Endoriftia persephone 'Hot96_1+Hot96_2'|Rep: NADH
dehydrogenase I E subunit - Endoriftia persephone
'Hot96_1+Hot96_2'
Length = 123
Score = 73.3 bits (172), Expect = 7e-12
Identities = 34/103 (33%), Positives = 58/103 (56%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
+E +V P ++ A++ L + Q +GGWL + M VA L++ + VYEVATFY
Sbjct: 19 EEIDRWVAKYPAEWRQSAVMAALRIVQDANGGWLTTALMDDVAAYLDMAPIAVYEVATFY 78
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCRLEA 520
+M+ +P+GK+ + +CT C + SD I+ +++ L A
Sbjct: 79 SMYELKPVGKHKICICTNVSCMINNSDRIVEHLEKRLGIGLRA 121
>UniRef50_A2F771 Cluster: Respiratory-chain NADH dehydrogenase 24 Kd
subunit family protein; n=2; Trichomonas vaginalis|Rep:
Respiratory-chain NADH dehydrogenase 24 Kd subunit
family protein - Trichomonas vaginalis G3
Length = 201
Score = 72.5 bits (170), Expect = 1e-11
Identities = 34/87 (39%), Positives = 54/87 (62%)
Frame = +2
Query: 242 P*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGK 421
P ++R A IPLL L QR++GG+L + +++I+ + RV+E A FY+MF +P
Sbjct: 41 PKENKRAATIPLLHLGQRENGGYLTTGVLQAISKIVGVTAGRVHETACFYSMFRFQPPNN 100
Query: 422 YHVQVCTTTPCWLRGSDAILNAIKQET 502
+ V+VC C+L GSD + AI++ T
Sbjct: 101 HIVEVCKGLSCYLTGSDNVKEAIQKAT 127
Score = 56.4 bits (130), Expect = 9e-07
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +1
Query: 517 GNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPK 678
G SP G+F++ EVECLGAC NAP++ ++ YY++L+ E K II +K + K
Sbjct: 134 GKSPDGQFTLEEVECLGACANAPVMILDGVYYQNLTAETAKIIIECVKAGKSVK 187
>UniRef50_A1WXW3 Cluster: NADH-quinone oxidoreductase, E subunit;
n=1; Halorhodospira halophila SL1|Rep: NADH-quinone
oxidoreductase, E subunit - Halorhodospira halophila
(strain DSM 244 / SL1) (Ectothiorhodospirahalophila
(strain DSM 244 / SL1))
Length = 170
Score = 70.9 bits (166), Expect = 4e-11
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMF-IRRPIGKY 424
+ + A+IP L + Q +GGWL S + A+ + +P+ +EVATFY+MF + P+G++
Sbjct: 31 QGRASAIIPALHILQDDNGGWLERSHVAAAADYIGMPRASAFEVATFYSMFHLDEPVGRH 90
Query: 425 HVQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
V CT C L G+D ++ +++ RL T
Sbjct: 91 KVNFCTNISCCLNGADELVAYAEEKLGIRLGET 123
Score = 40.7 bits (91), Expect = 0.046
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 511 VGGNSPCGKFS-VSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 657
+G +P G+ + V E ECL AC APM+ V+ YY L+ E EI+ L
Sbjct: 120 LGETTPDGRITLVREEECLAACTRAPMMVVDGHYYTHLTRERIDEILDGL 169
>UniRef50_A5UZH6 Cluster: NADH-quinone oxidoreductase, E subunit;
n=5; Chloroflexi (class)|Rep: NADH-quinone
oxidoreductase, E subunit - Roseiflexus sp. RS-1
Length = 174
Score = 70.1 bits (164), Expect = 7e-11
Identities = 34/98 (34%), Positives = 61/98 (62%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A++PLL +AQ + G +L +AM +VAE+L++P V+EVA FY++ +P+GK+ +QVC
Sbjct: 24 AVLPLLFIAQDEYG-YLTEAAMREVAELLDMPPTDVFEVAGFYSLLYEQPVGKWVLQVCD 82
Query: 443 TTPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQRL 556
PC G++ ++ ++ + ++ T F QR+
Sbjct: 83 DVPCAFCGAEDLIATLQAKLGIGVDQTTPDGMFTLQRV 120
Score = 45.6 bits (103), Expect = 0.002
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSV-EDTKEIISKLK-KDEKPKPG 684
V +P G F++ V+CL C +AP++Q N +YY DL+ E +++++ L+ + E +
Sbjct: 106 VDQTTPDGMFTLQRVKCLADCDHAPVLQANLEYYHDLTTPEKVEQVLAMLRQRAESGEQL 165
Query: 685 PRSGRFA 705
SGR+A
Sbjct: 166 SISGRYA 172
>UniRef50_A3ERJ3 Cluster: NADH ubiquinone oxidoreductase 24 kD
subunit; n=2; Leptospirillum|Rep: NADH ubiquinone
oxidoreductase 24 kD subunit - Leptospirillum sp. Group
II UBA
Length = 168
Score = 69.7 bits (163), Expect = 9e-11
Identities = 29/83 (34%), Positives = 54/83 (65%)
Frame = +2
Query: 251 SQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHV 430
++ GA++ +L Q + G ++P A+ V EIL +PK ++Y V TFY+ F + P GK+ +
Sbjct: 23 NREGAVVQILQKVQEKYG-YVPADALEFVGEILEIPKSKMYGVLTFYSQFYQEPRGKFVL 81
Query: 431 QVCTTTPCWLRGSDAILNAIKQE 499
++C T C +RG+ +++ +K+E
Sbjct: 82 KICVGTACHVRGAGLLVDKVKEE 104
Score = 35.1 bits (77), Expect = 2.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGP 687
G N+ F++ V CLG+C APM V Y LS + +I + +++ + + P
Sbjct: 110 GENTEDMLFTLEPVACLGSCALAPMAMVQGTAYGKLSADKMVSLIRQFEEEAEKEEEP 167
>UniRef50_P65574 Cluster: NADH-quinone oxidoreductase subunit E;
n=23; Actinomycetales|Rep: NADH-quinone oxidoreductase
subunit E - Mycobacterium bovis
Length = 252
Score = 69.7 bits (163), Expect = 9e-11
Identities = 40/101 (39%), Positives = 58/101 (57%)
Frame = +2
Query: 194 VLAGQSKESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVY 373
VLA +++ +G P R R A++PLL L Q + +L + + A+ L L V
Sbjct: 36 VLARLEVDAKEIIGRYPDR--RSALLPLLHLVQGEDS-YLTPAGLRFCADQLGLTGAEVS 92
Query: 374 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQ 496
VA+FYTM+ RRP G+Y V VCT T C + G DAI + +K+
Sbjct: 93 AVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKE 133
Score = 40.7 bits (91), Expect = 0.046
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKP---GPRSG-R 699
G ++ +EC AC AP++ VN +++++ + E +E++ L+ D P P G R
Sbjct: 146 GVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFR 205
Query: 700 FASEPLGGLTSL--TEEPTGPG 759
S L GL E GPG
Sbjct: 206 QTSRILAGLPDQRPDEGQGGPG 227
>UniRef50_Q6MDR2 Cluster: Putative NADH-ubiquinone oxidoreductase
chain E; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Putative NADH-ubiquinone oxidoreductase chain
E - Protochlamydia amoebophila (strain UWE25)
Length = 159
Score = 69.3 bits (162), Expect = 1e-10
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +2
Query: 251 SQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHV 430
++R A+IP L LAQ + G +LPI +++A + +L V + TFY MF P+GK+ +
Sbjct: 7 NKRSALIPALHLAQAEKG-YLPIEVQNELAFLFDLEPSEVNSIVTFYDMFFEEPVGKHVI 65
Query: 431 QVCTTTPCWLRGSDAILNAIKQE 499
VC C LRG+D L + Q+
Sbjct: 66 HVCKNISCMLRGADGFLARLCQK 88
Score = 33.5 bits (73), Expect = 6.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKK 663
G + G+F+V ECL AC AP++ V+D + + + I K K+
Sbjct: 94 GETTQDGEFTVIASECLAACDKAPVMIVDDKVIGPVEITQIDDYIQKAKQ 143
>UniRef50_A7HLQ9 Cluster: NADH-quinone oxidoreductase, E subunit;
n=3; Thermotogaceae|Rep: NADH-quinone oxidoreductase, E
subunit - Fervidobacterium nodosum Rt17-B1
Length = 161
Score = 68.9 bits (161), Expect = 2e-10
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 QRGAMIPLLDLAQ-RQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHV 430
+R ++ LL Q ++P +AE LN+P +VYEV TFYTMF +P GKY +
Sbjct: 20 ERDMLVYLLHRVQDHYQSHYIPPEVGEMIAEELNIPSSKVYEVLTFYTMFSTKPRGKYII 79
Query: 431 QVCTTTPCWLRGSDAILNAIKQE 499
+VCT+ PC + G I+ +KQ+
Sbjct: 80 RVCTSLPCHVPGGREIVQFLKQK 102
Score = 52.8 bits (121), Expect = 1e-05
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE 669
G + G F++ E CLG C +P+I VND YY DL+VE EII LK E
Sbjct: 108 GETTKDGLFTLEETGCLGLCGVSPVIMVNDQYYGDLTVEKVNEIIENLKGGE 159
>UniRef50_A7CUG1 Cluster: NADH-quinone oxidoreductase, E subunit;
n=1; Opitutaceae bacterium TAV2|Rep: NADH-quinone
oxidoreductase, E subunit - Opitutaceae bacterium TAV2
Length = 163
Score = 68.9 bits (161), Expect = 2e-10
Identities = 33/87 (37%), Positives = 52/87 (59%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQ 433
+R A +PLL L Q + G++ AM +A+ L + ++ V EV TFY MF R+PIG+ H++
Sbjct: 21 KRSATLPLLHLIQ-EDAGYISDEAMEWIADKLGIERIHVLEVVTFYPMFRRKPIGRRHIK 79
Query: 434 VCTTTPCWLRGSDAILNAIKQETNCRL 514
VC T C L G + +++E + L
Sbjct: 80 VCRTLSCALMGGYKVCETMQKEFDTHL 106
Score = 37.9 bits (84), Expect = 0.32
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +1
Query: 523 SPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKK 663
SP G+ +V VECL +C AP++ +++ +E+++ +E+ + +K+
Sbjct: 110 SPDGEVTVEFVECLASCGTAPVVMIDETLHENVTPARARELAALIKQ 156
>UniRef50_Q5JIQ1 Cluster: NADH:ubiquinone oxidoreductase, subunit E;
n=2; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase, subunit E - Pyrococcus kodakaraensis
(Thermococcus kodakaraensis)
Length = 154
Score = 68.9 bits (161), Expect = 2e-10
Identities = 34/79 (43%), Positives = 48/79 (60%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
++IPLL Q + G +LP + ++A L +P RVY VATFY F P+GKY V+VC
Sbjct: 17 SLIPLLQRTQERFG-YLPREVLEEIANYLGIPLSRVYGVATFYAQFRFEPLGKYVVKVCH 75
Query: 443 TTPCWLRGSDAILNAIKQE 499
T C + G+ I A+K+E
Sbjct: 76 GTACHVNGAVNIAQALKEE 94
Score = 36.3 bits (80), Expect = 0.98
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKK 663
G + G ++ V CLG C AP+I +N+ + L+ + ++++ +LK+
Sbjct: 100 GQTTEDGLVTLERVACLGCCSLAPVIMINEKVFGKLTPDKVRKLVKQLKE 149
>UniRef50_Q3ZXM4 Cluster: Hydrogenase subunit HymA; n=13; cellular
organisms|Rep: Hydrogenase subunit HymA -
Dehalococcoides sp. (strain CBDB1)
Length = 161
Score = 68.5 bits (160), Expect = 2e-10
Identities = 36/104 (34%), Positives = 58/104 (55%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
R + +I +L Q++ WLP A++KV++ LN+P RVY VATFY +F P GK++
Sbjct: 25 RDKADMLIQVLLKIQKEYN-WLPKEALYKVSQTLNVPVNRVYHVATFYKLFSVIPKGKHN 83
Query: 428 VQVCTTTPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQRLN 559
V VC T C + G+ IL+ +++ + T F + +N
Sbjct: 84 VSVCVGTACHVFGAPKILDRLEKSLGIKAGETTSDLKFSLETVN 127
Score = 35.9 bits (79), Expect = 1.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 535 KFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIIS 651
KFS+ V CLG C P++ V+ Y+ L D ++I++
Sbjct: 120 KFSLETVNCLGCCALGPVVVVDGHYHGKLPTADAEKILA 158
>UniRef50_P0AFD3 Cluster: NADH-quinone oxidoreductase subunit E;
n=66; Gammaproteobacteria|Rep: NADH-quinone
oxidoreductase subunit E - Shigella flexneri
Length = 166
Score = 67.7 bits (158), Expect = 3e-10
Identities = 29/85 (34%), Positives = 51/85 (60%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
R A I L + Q+Q G W+P A+H +A++L +P V VATFY+ R+P+G++ ++
Sbjct: 33 RAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRY 91
Query: 437 CTTTPCWLRGSDAILNAIKQETNCR 511
C + C + G I A++++ N +
Sbjct: 92 CDSVVCHINGYQGIQAALEKKLNIK 116
>UniRef50_Q0AZ71 Cluster: NADH:ubiquinone oxidoreductase 24 kD
subunit-like protein precursor; n=4; Clostridiales|Rep:
NADH:ubiquinone oxidoreductase 24 kD subunit-like
protein precursor - Syntrophomonas wolfei subsp. wolfei
(strain Goettingen)
Length = 182
Score = 66.9 bits (156), Expect = 6e-10
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
R ++G++I +L AQ G+LP+S + +A L + +VY +ATFYT F +P GKY
Sbjct: 33 RHEKGSLIAILQQAQ-DIYGYLPLSVLKCIARELGIKPAKVYGIATFYTQFRLQPAGKYQ 91
Query: 428 VQVCTTTPCWLRGSDAILNAIKQE 499
+ C T C + GS+ I + + QE
Sbjct: 92 IMFCQGTACHVNGSERIESTLCQE 115
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE 669
G +P G FS+ CLG C AP++ +N Y LS E II K+K E
Sbjct: 121 GETTPDGLFSLESAACLGCCSLAPVMMINGQAYGPLSAEKAIAIIRKIKAAE 172
>UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=1;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 574
Score = 66.5 bits (155), Expect = 8e-10
Identities = 31/91 (34%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMF-IRRPIGKYHV 430
++ A++P L LAQ+++ L + VAE++++P + Y +AT+Y+M+ + +P+G+YH+
Sbjct: 20 KQSALMPALMLAQKENANRLDQDDIRTVAELVDVPFGKAYGLATYYSMYNVEKPVGRYHL 79
Query: 431 QVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
QV T P L G+ IL+ +++ N R T
Sbjct: 80 QVDTNIPATLMGAGEILDHLEKTLNIRAGET 110
Score = 56.8 bits (131), Expect = 7e-07
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPK 678
G +P G F++SEVECL +C P+IQVND YYE+++ E ++ L+K P+
Sbjct: 108 GETTPDGLFTLSEVECLASCGTCPVIQVNDVYYENMTREKVDSLLDSLRKGMMPE 162
>UniRef50_A6PRE1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Victivallis vadensis ATCC BAA-548|Rep:
NADH dehydrogenase (Ubiquinone), 24 kDa subunit -
Victivallis vadensis ATCC BAA-548
Length = 176
Score = 66.5 bits (155), Expect = 8e-10
Identities = 36/94 (38%), Positives = 55/94 (58%)
Frame = +2
Query: 230 VGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRR 409
VG P R +RG++I +L AQ G +L VA LN+ + VY V +FY+ FI +
Sbjct: 34 VGDNPDR-RRGSLIQILHRAQHLFG-YLSEEVQSFVAARLNISRAEVYGVISFYSYFIDQ 91
Query: 410 PIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCR 511
PIG+Y + VCT T C+++G+ +L+ K+ R
Sbjct: 92 PIGRYKINVCTGTACFVKGAPKVLDEFKRRLEIR 125
Score = 41.9 bits (94), Expect = 0.020
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEII 648
G ++P GKF + + C+GAC AP++ VN+ Y +++ E +I+
Sbjct: 127 GESTPDGKFFLGALRCVGACSLAPVVMVNEKVYGNVTAEKVADIL 171
>UniRef50_Q6A6G2 Cluster: NADH dehydrogenase I chain E; n=1;
Propionibacterium acnes|Rep: NADH dehydrogenase I chain
E - Propionibacterium acnes
Length = 261
Score = 66.1 bits (154), Expect = 1e-09
Identities = 32/100 (32%), Positives = 55/100 (55%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
R A++P+L L Q G P+ + AE+L + +V VATFYTM+ + P G++H+ V
Sbjct: 55 RSALLPILHLVQSVDGRISPVG-IETAAEVLGITTAQVSGVATFYTMYKKHPAGQHHIGV 113
Query: 437 CTTTPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQRL 556
CTT C + G + +L ++++ + T F +R+
Sbjct: 114 CTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFSLERV 153
Score = 47.6 bits (108), Expect = 4e-04
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEK 672
G +P GKFS+ VEC AC AP++ VN +Y ++++ +EI+ L +DE+
Sbjct: 140 GQTTPDGKFSLERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEE 192
>UniRef50_A3THI9 Cluster: ATP synthase subunit E; n=3;
Actinomycetales|Rep: ATP synthase subunit E - Janibacter
sp. HTCC2649
Length = 417
Score = 66.1 bits (154), Expect = 1e-09
Identities = 38/101 (37%), Positives = 55/101 (54%)
Frame = +2
Query: 194 VLAGQSKESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVY 373
VLAG ++ V P +R A++PLL L Q G ++ + AE+L L + V
Sbjct: 27 VLAGLHADAELVVAKYP--QKRSALLPLLHLVQSVDG-YVTGRGIDFCAEVLELSRAEVS 83
Query: 374 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQ 496
VATFYT + R P G+Y V VCT T C + G D I +++ +
Sbjct: 84 GVATFYTQYKRHPNGEYTVGVCTNTLCAIMGGDEIWDSVSE 124
Score = 41.1 bits (92), Expect = 0.035
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE--KPKPGPR---SG 696
GK ++ +EC AC AP++ N +++++ + E T +++ L+ KP GP S
Sbjct: 137 GKVTLERIECNAACDYAPVVMANWEFFDNQTPESTNQLVDDLRAGTPVKPTRGPNSLCSF 196
Query: 697 RFASEPLGGLT-SLTEEPTGPG 759
+ S L G L +E G G
Sbjct: 197 KQMSRVLAGFNDGLADEGVGAG 218
>UniRef50_Q8NK93 Cluster: NADH-ubiquinone oxidoreductase 24kDa
subunit; n=1; Phanerochaete chrysosporium|Rep:
NADH-ubiquinone oxidoreductase 24kDa subunit -
Phanerochaete chrysosporium (White-rot fungus)
(Sporotrichumpruinosum)
Length = 56
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/48 (60%), Positives = 35/48 (72%)
Frame = +1
Query: 616 DLSVEDTKEIISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEEPTGPG 759
DL+ E TK+++ KK EKPKPGP+SGR SE GLT+LT EP GPG
Sbjct: 1 DLTPETTKKVLDAFKKGEKPKPGPQSGRHTSENSAGLTALTSEPYGPG 48
>UniRef50_Q2RHR8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Moorella thermoacetica ATCC 39073|Rep:
NADH dehydrogenase (Ubiquinone), 24 kDa subunit -
Moorella thermoacetica (strain ATCC 39073)
Length = 157
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/92 (36%), Positives = 53/92 (57%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
R Q A+I +L +Q + G+LP + +A+ L L +VY V +FY F +P GKY
Sbjct: 21 RGQPSALIEVLHQSQ-ELVGYLPRNVQVAIADGLGLSLSQVYSVVSFYNHFTTKPKGKYQ 79
Query: 428 VQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
V VC T C+++G+ AIL ++QE ++ T
Sbjct: 80 VSVCMGTACFVKGAPAILERLEQELGTKVGDT 111
Score = 37.5 bits (83), Expect = 0.43
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISK 654
VG + G+F++++V CLG C P++ VN + L+ + EI+ +
Sbjct: 108 VGDTTADGRFTINQVRCLGCCALGPVMTVNQKAHGRLTPDTALEILKE 155
>UniRef50_Q9WXM7 Cluster: NADP-reducing hydrogenase, subunit A; n=4;
Thermotogaceae|Rep: NADP-reducing hydrogenase, subunit A
- Thermotoga maritima
Length = 176
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/96 (32%), Positives = 54/96 (56%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
KE F+ ++ A+I +L AQ + G+LP + +++ L++P +VY V TFY
Sbjct: 24 KELENFIEENGYEGKKDALIQVLHKAQ-ELFGYLPADVLEYISDKLDVPLSKVYGVVTFY 82
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQE 499
F +P GK+ ++VC T C+++G+D I +E
Sbjct: 83 NFFSTKPKGKHQIKVCLGTACYVKGADRIFERFLEE 118
Score = 44.4 bits (100), Expect = 0.004
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVN-DDYYEDLSVEDTKEIISKLKKD 666
G FSV V CLGAC AP++ V+ DD+Y ++ + +IISK K++
Sbjct: 130 GMFSVHGVRCLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKRE 175
>UniRef50_Q746S5 Cluster: NADH dehydrogenase I, E subunit; n=4;
Desulfuromonadales|Rep: NADH dehydrogenase I, E subunit
- Geobacter sulfurreducens
Length = 162
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/90 (36%), Positives = 51/90 (56%)
Frame = +2
Query: 212 KESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY 391
KE + V H + R A + ++ QR G WL A+ + AE+L L ++V E+ATFY
Sbjct: 8 KELQARVAHAV--TSREAAVDVMKALQRHYG-WLTDEAVGEAAELLGLTPLQVEELATFY 64
Query: 392 TMFIRRPIGKYHVQVCTTTPCWLRGSDAIL 481
M RRP+GK + VC + CW G ++++
Sbjct: 65 EMIYRRPVGKRVIHVCDSISCWALGGESLM 94
>UniRef50_Q1EVZ9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Clostridium oremlandii OhILAs|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit - Clostridium
oremlandii OhILAs
Length = 166
Score = 64.5 bits (150), Expect = 3e-09
Identities = 32/86 (37%), Positives = 51/86 (59%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
+ GA+IP L Q G+LP A+ V+E L++P ++Y VA+FY++F P G++
Sbjct: 29 KGTEGALIPALHKIQ-SIYGYLPEEALILVSEELDIPITQIYGVASFYSLFSLEPKGQHV 87
Query: 428 VQVCTTTPCWLRGSDAILNAIKQETN 505
+ VC T C+++GS IL + E N
Sbjct: 88 ISVCLGTACYVKGSQNILERLSSELN 113
Score = 39.5 bits (88), Expect = 0.11
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISK 654
G + GKF++ C+GAC AP+I +++ Y L+ D +I+S+
Sbjct: 117 GNTTEDGKFTLQATRCIGACGLAPVIMIDEKVYGRLTPSDVPKILSE 163
>UniRef50_Q0EZQ5 Cluster: NADH dehydrogenase I chain E; n=1;
Mariprofundus ferrooxydans PV-1|Rep: NADH dehydrogenase
I chain E - Mariprofundus ferrooxydans PV-1
Length = 170
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/75 (40%), Positives = 48/75 (64%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
+ A++P+L +AQ + G+L + VA++L L M+V EV TFYTMF +P G Y ++V
Sbjct: 31 QSALMPVLYMAQ-EDFGYLSMDVQQHVADVLGLRLMQVREVVTFYTMFREKPCGTYLLEV 89
Query: 437 CTTTPCWLRGSDAIL 481
CT C L G++ ++
Sbjct: 90 CTNAGCMLNGANELV 104
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/70 (40%), Positives = 43/70 (61%)
Frame = +1
Query: 457 ASRL*CHIECN*TGNKL*VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDT 636
A+ L H+ C G K VG + G F+V+EVEC GAC AP++QVN Y+E ++ E
Sbjct: 100 ANELVAHM-CETLGIK--VGETTDDGLFTVAEVECAGACGGAPVVQVNHTYHEKVTPETM 156
Query: 637 KEIISKLKKD 666
+I++++ D
Sbjct: 157 DALITQMRAD 166
>UniRef50_Q02CT9 Cluster: NADH-quinone oxidoreductase, E subunit;
n=1; Solibacter usitatus Ellin6076|Rep: NADH-quinone
oxidoreductase, E subunit - Solibacter usitatus (strain
Ellin6076)
Length = 160
Score = 64.1 bits (149), Expect = 4e-09
Identities = 32/75 (42%), Positives = 46/75 (61%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQ 433
QR AMIP+L AQ + G + + +VA + + ++V EV T+Y+M R+P+GKYHVQ
Sbjct: 23 QRSAMIPMLMYAQDELG-CVSDELIAEVARRIGVTPLQVNEVLTYYSMLHRKPLGKYHVQ 81
Query: 434 VCTTTPCWLRGSDAI 478
VCT C L D +
Sbjct: 82 VCTNISCLLHDGDKL 96
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE 669
G+FS+ EVEC+GAC AP IQ+N D++ ++ E +++ L+K +
Sbjct: 115 GQFSIEEVECMGACSWAPAIQINYDFHHYVTPEKLDQLLDGLRKKQ 160
>UniRef50_A4SXP9 Cluster: NADH-quinone oxidoreductase, E subunit;
n=51; Burkholderiales|Rep: NADH-quinone oxidoreductase,
E subunit - Polynucleobacter sp. QLW-P1DMWA-1
Length = 168
Score = 64.1 bits (149), Expect = 4e-09
Identities = 31/89 (34%), Positives = 49/89 (55%)
Frame = +2
Query: 230 VGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRR 409
+ P ++ A++ L AQ + G W+ + VA+IL +P + V EVATFY M+ +
Sbjct: 19 IAKYPAEHKQSAVMACLIAAQTEVG-WVSPEVIEAVAQILEMPTIAVDEVATFYNMYNTK 77
Query: 410 PIGKYHVQVCTTTPCWLRGSDAILNAIKQ 496
PIGKY + +CT PC L + +K+
Sbjct: 78 PIGKYKLVICTNLPCQLTHGETAATYLKE 106
Score = 41.1 bits (92), Expect = 0.035
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 523 SPCGKFSVSEVECLGACVNAPMIQVNDD-YYEDLSVEDTKEIISKLKKDEK 672
+PCG F++ E EC+GAC ++P++ VND +S E ++S+L+ K
Sbjct: 116 TPCGTFTLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLSELRAGGK 166
>UniRef50_A0UV12 Cluster: NADH-quinone oxidoreductase, E subunit;
n=8; Bacteria|Rep: NADH-quinone oxidoreductase, E
subunit - Clostridium cellulolyticum H10
Length = 163
Score = 63.7 bits (148), Expect = 6e-09
Identities = 29/84 (34%), Positives = 49/84 (58%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
+ RGA+IP+L Q + G+L + +++E LN+ +Y V TFYT F P G++
Sbjct: 26 KGTRGALIPVLHEVQ-EVYGYLSEDVLKEISEKLNVSLAEIYGVVTFYTQFSLNPKGRFK 84
Query: 428 VQVCTTTPCWLRGSDAILNAIKQE 499
+ +C T C+++GS IL K++
Sbjct: 85 INICMGTACYVKGSGEILEKFKEK 108
Score = 45.6 bits (103), Expect = 0.002
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
VG + GKFS+ C+GAC AP+I +NDD + L +D + I+ K K
Sbjct: 113 VGQCTEDGKFSLDACRCIGACGLAPVIMINDDVHGRLLPDDVEAILEKYK 162
>UniRef50_A1HP41 Cluster: NADH-quinone oxidoreductase, E subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, E
subunit - Thermosinus carboxydivorans Nor1
Length = 166
Score = 63.3 bits (147), Expect = 7e-09
Identities = 34/88 (38%), Positives = 53/88 (60%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
+GA+IP+L AQ + G+L + +AE L++P ++Y V TFY F P G+ ++V
Sbjct: 33 KGALIPVLQEAQN-AYGYLSKEVIEYIAEKLDIPVSQIYGVVTFYAQFHLNPRGRNIIRV 91
Query: 437 CTTTPCWLRGSDAILNAIKQETNCRLEA 520
C T C +RG+ AIL A+ E N ++ A
Sbjct: 92 CQGTACHVRGAKAILKAL--EDNLKITA 117
Score = 41.1 bits (92), Expect = 0.035
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +1
Query: 502 KL*VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISK 654
K+ GG + KF++ V C+GAC AP++ +NDD + L+ E I++K
Sbjct: 114 KITAGGTTADLKFTLETVACIGACGLAPVMMINDDTHGRLTPEVIPSILAK 164
>UniRef50_O27591 Cluster: NADP-reducing hydrogenase, subunit A; n=1;
Methanothermobacter thermautotrophicus str. Delta H|Rep:
NADP-reducing hydrogenase, subunit A - Methanobacterium
thermoautotrophicum
Length = 149
Score = 62.9 bits (146), Expect = 1e-08
Identities = 32/92 (34%), Positives = 55/92 (59%)
Frame = +2
Query: 221 RXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMF 400
R F G+ +S+ +IP+L Q + G+LP A+ +VA + + +Y VATFY F
Sbjct: 7 RIFAGYTGHKSE---IIPILQDIQ-DAYGYLPEDALEEVASFTGVSRAHLYGVATFYAQF 62
Query: 401 IRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQ 496
+P G+ H+ VCT T C + G++ +L+A+++
Sbjct: 63 RFKPRGRKHIMVCTGTACHVSGAEQVLDALER 94
>UniRef50_Q092T1 Cluster: NADH-ubiquinone oxidoreductase 24 kDa
subunit; n=2; Cystobacterineae|Rep: NADH-ubiquinone
oxidoreductase 24 kDa subunit - Stigmatella aurantiaca
DW4/3-1
Length = 162
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/84 (38%), Positives = 45/84 (53%)
Frame = +2
Query: 230 VGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRR 409
+ H P + M+P L L Q G W P + VA+ L + R YEVA+FY M+ +
Sbjct: 22 LSHYPPDRKSAGMLPALRLLQDLKG-WCPPEGIRLVAKNLEVTPERAYEVASFYVMYHLK 80
Query: 410 PIGKYHVQVCTTTPCWLRGSDAIL 481
GKY + VCT C LRG++ +L
Sbjct: 81 KPGKYTIDVCTNLSCSLRGAEKML 104
Score = 45.6 bits (103), Expect = 0.002
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +1
Query: 499 NKL*VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 657
NKL + F++ E ECL +C AP +QVN+D++E+L+ E+++KL
Sbjct: 109 NKLGLKAGEANETFTLRETECLASCGTAPCLQVNEDHHENLTKARVDELLAKL 161
>UniRef50_Q8ABI7 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=3; Bacteroides|Rep: NADH-ubiquinone oxidoreductase
subunit - Bacteroides thetaiotaomicron
Length = 158
Score = 62.1 bits (144), Expect = 2e-08
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
G +I +L AQ G +LP +A L +P +VY V TFYT F P GK+ + VC
Sbjct: 26 GELINILHEAQHLHG-YLPEEMQRIIASKLRIPVSKVYGVVTFYTFFTMTPKGKHPISVC 84
Query: 440 TTTPCWLRGSDAILNAIKQ 496
T C++RGS+ +L K+
Sbjct: 85 MGTACYVRGSEKLLEEFKR 103
Score = 44.0 bits (99), Expect = 0.005
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
VG +P GK+S+ + C+GAC AP++ + + Y L D K+II +L+
Sbjct: 109 VGETTPDGKYSLDCLRCVGACGLAPVVMIGEKVYGRLQPVDVKKIIEELE 158
>UniRef50_Q67JG1 Cluster: Putative iron hydrogenase small subunit
gamma; n=3; Firmicutes|Rep: Putative iron hydrogenase
small subunit gamma - Symbiobacterium thermophilum
Length = 186
Score = 62.1 bits (144), Expect = 2e-08
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
RS +I +L AQ + G+LP VA L++P VY V TFY F P+GKY
Sbjct: 28 RSSADHLIAVLHKAQ-EIFGFLPEEVQRHVAAALHVPPSEVYGVVTFYNYFTLTPVGKYP 86
Query: 428 VQVCTTTPCWLRGSDAILNAIKQE 499
+ VC T C+++G+ +L+ ++E
Sbjct: 87 INVCMGTACYVQGAGRLLSLFERE 110
Score = 37.5 bits (83), Expect = 0.43
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKK---DEKPKPG 684
G +P G FS+ CLGAC AP++ V + + L+ D +++++L++ E+P+ G
Sbjct: 116 GQVTPDGLFSLEVCRCLGACGLAPVVTVAGEVHGKLTESDALKLVAELRQRAAAEQPQAG 175
>UniRef50_A5FSK9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=3; Dehalococcoides|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Dehalococcoides sp. BAV1
Length = 155
Score = 62.1 bits (144), Expect = 2e-08
Identities = 28/100 (28%), Positives = 55/100 (55%)
Frame = +2
Query: 251 SQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHV 430
S R +++P L+ Q + G ++P A++ + E L++P + +Y + TFY++ GKY +
Sbjct: 18 SSRLSLLPCLEAVQEECG-YIPHEAVNYLRECLSIPSIDIYGMITFYSLLSTNQKGKYVI 76
Query: 431 QVCTTTPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQ 550
++C + PC+L G++ IL+ + T L F +
Sbjct: 77 RLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDRRFTLE 116
>UniRef50_A5D2H5 Cluster: NADH:ubiquinone oxidoreductase 24 kD
subunit; n=1; Pelotomaculum thermopropionicum SI|Rep:
NADH:ubiquinone oxidoreductase 24 kD subunit -
Pelotomaculum thermopropionicum SI
Length = 192
Score = 62.1 bits (144), Expect = 2e-08
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
+G +I +L AQ G+LP +AE L +P V V TFY++F RP GKY + V
Sbjct: 49 KGQLIRILQKAQ-DIFGYLPDDVQAFIAERLRVPVAEVNGVVTFYSLFSTRPKGKYIINV 107
Query: 437 CTTTPCWLRGSDAILNAIKQ 496
C T C+++G+ +++A+K+
Sbjct: 108 CMGTACYVKGAQQVMDALKK 127
Score = 36.7 bits (81), Expect = 0.74
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 502 KL*VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEK 672
K+ G +P G F++ C+GAC AP++ VN + +E+I +K EK
Sbjct: 130 KIDEGETTPDGLFTLKSTRCVGACGLAPILAVNGKVQGMVDPGKIQELIKNCRKGEK 186
>UniRef50_Q9S5X7 Cluster: Fe-hydrogenase, subunit gamma; n=5;
Thermotogaceae|Rep: Fe-hydrogenase, subunit gamma -
Thermotoga maritima
Length = 164
Score = 61.7 bits (143), Expect = 2e-08
Identities = 26/65 (40%), Positives = 40/65 (61%)
Frame = +2
Query: 308 WLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNA 487
+LP ++ V+ + +P ++Y VATFY F +P GKY + VC T C + GS +L A
Sbjct: 38 YLPEDVINYVSTAMGIPPAKIYGVATFYAQFSLKPKGKYTIMVCDGTACHMAGSPEVLKA 97
Query: 488 IKQET 502
I++ET
Sbjct: 98 IEEET 102
Score = 48.4 bits (110), Expect = 2e-04
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEK 672
FS+ +V CLGAC AP++ +N + Y +L+ + KEI+ K+K+ E+
Sbjct: 115 FSLDQVGCLGACALAPVMVINGEVYGNLTADKVKEILRKIKEKER 159
>UniRef50_A4J9N9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=11; Bacteria|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Desulfotomaculum reducens
MI-1
Length = 177
Score = 61.7 bits (143), Expect = 2e-08
Identities = 33/94 (35%), Positives = 51/94 (54%)
Frame = +2
Query: 215 ESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYT 394
E F+ L + +GA+I +L AQ G +LP +A L +P VY V +FY+
Sbjct: 24 ELESFINSL--ETTKGALIEILHKAQHIFG-YLPRDVQLFIARKLGIPGAEVYGVVSFYS 80
Query: 395 MFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQ 496
F +P GK+ + VC T C++RG+D I+ K+
Sbjct: 81 YFTTKPSGKHTISVCMGTACFVRGADKIVEKFKE 114
Score = 43.2 bits (97), Expect = 0.009
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIIS 651
G F++ +V C+GAC AP++ V+D Y + VED +II+
Sbjct: 127 GLFTIKDVRCIGACGLAPVVMVDDKVYGRVKVEDVDDIIN 166
>UniRef50_Q2LYE8 Cluster: NADH:ubiquinone oxidoreductase 24 kD
subunit NuoE; n=1; Syntrophus aciditrophicus SB|Rep:
NADH:ubiquinone oxidoreductase 24 kD subunit NuoE -
Syntrophus aciditrophicus (strain SB)
Length = 173
Score = 61.3 bits (142), Expect = 3e-08
Identities = 28/84 (33%), Positives = 51/84 (60%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQ 433
++ A + +L Q + +LP A+ V++ L +P R+YE+ATFY +F +P GKY ++
Sbjct: 33 EKSAAVAVLQDLQEEFR-YLPKEALTIVSDELQVPLSRIYEIATFYNVFSLKPRGKYLIE 91
Query: 434 VCTTTPCWLRGSDAILNAIKQETN 505
VC T C ++G ++N +++ N
Sbjct: 92 VCAGTACHVQGGFNLMNRLERNLN 115
Score = 33.1 bits (72), Expect = 9.2
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKK 663
F++ EV CLG C AP+++++ + + L+ ++ I+ +K
Sbjct: 127 FTLEEVRCLGCCSLAPVVRIDGNIHPYLTQDEIPGILKNYRK 168
>UniRef50_Q2AG84 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=5; Bacteria|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Halothermothrix orenii H
168
Length = 167
Score = 61.3 bits (142), Expect = 3e-08
Identities = 31/80 (38%), Positives = 47/80 (58%)
Frame = +2
Query: 266 MIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTT 445
+IP+L Q++ +LP + +A +++L VY VATFY F P GKY + VC
Sbjct: 28 LIPILQEVQKEYR-YLPEEILTYIATVMDLSPATVYGVATFYAQFSLDPKGKYVINVCDG 86
Query: 446 TPCWLRGSDAILNAIKQETN 505
T C + GS +LNAI+++ N
Sbjct: 87 TACHVSGSLPVLNAIRKKLN 106
Score = 35.9 bits (79), Expect = 1.3
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 657
F+V V CLGAC AP++ +N Y ++ E + II +L
Sbjct: 119 FTVETVSCLGACGLAPVVTINGKVYGKMTPEAIEVIIDEL 158
>UniRef50_Q8YYU5 Cluster: NADH dehydrogenase I chain E; n=4;
Bacteria|Rep: NADH dehydrogenase I chain E - Anabaena
sp. (strain PCC 7120)
Length = 164
Score = 60.9 bits (141), Expect = 4e-08
Identities = 34/83 (40%), Positives = 49/83 (59%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQ 433
Q+ A+I +L AQ + G+L + +A L LP RVY VATFY +F P G +
Sbjct: 30 QQDALIEILHKAQ-ELFGYLENDLLLYIAHSLKLPPSRVYGVATFYHLFSLAPQGVHSCV 88
Query: 434 VCTTTPCWLRGSDAILNAIKQET 502
VCT T C+++GS AIL +++ T
Sbjct: 89 VCTGTACYVKGSSAILADLEKAT 111
>UniRef50_Q2JFL6 Cluster: NADH-quinone oxidoreductase, E subunit;
n=5; Actinomycetales|Rep: NADH-quinone oxidoreductase, E
subunit - Frankia sp. (strain CcI3)
Length = 262
Score = 60.9 bits (141), Expect = 4e-08
Identities = 30/93 (32%), Positives = 48/93 (51%)
Frame = +2
Query: 218 SRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTM 397
++ + P R A++PLL L Q + G + + A++L + + V VATFYTM
Sbjct: 11 AQEIIARYPAGRSRSALLPLLHLVQAEQG-CVTAQGVAFCADVLGITRAEVGAVATFYTM 69
Query: 398 FIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQ 496
+ R P+G Y V VCT C L G + + + +
Sbjct: 70 YKRHPVGDYLVSVCTNLSCALLGGEDVYERVSK 102
Score = 44.0 bits (99), Expect = 0.005
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +1
Query: 523 SPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRSGRF 702
+P G ++ ECL AC AP++ VN ++Y+ + + + I+ L+ +P P R G
Sbjct: 112 TPDGSITLEHAECLAACDYAPVMTVNYEFYDQVDPDSAQAIVEDLRAGRRPAP-TRGGPL 170
Query: 703 AS 708
S
Sbjct: 171 CS 172
>UniRef50_Q01WJ0 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=2; Bacteria|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Solibacter usitatus
(strain Ellin6076)
Length = 170
Score = 60.9 bits (141), Expect = 4e-08
Identities = 30/79 (37%), Positives = 48/79 (60%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A+I L Q + G+L + + VA +L +P RVY ATFY F +P G++ VCT
Sbjct: 33 ALIETLHTVQ-ECFGYLDEAGLRFVASVLRVPLSRVYGAATFYHFFTLKPKGRHTCVVCT 91
Query: 443 TTPCWLRGSDAILNAIKQE 499
T C+++G+ A+L AI+++
Sbjct: 92 GTACYIKGAPALLGAIEKQ 110
>UniRef50_Q8RBD2 Cluster: NADH:ubiquinone oxidoreductase 24 kD
subunit; n=3; Thermoanaerobacter|Rep: NADH:ubiquinone
oxidoreductase 24 kD subunit - Thermoanaerobacter
tengcongensis
Length = 169
Score = 60.5 bits (140), Expect = 5e-08
Identities = 26/88 (29%), Positives = 53/88 (60%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
G++I +++ AQ + G+LPI +++ + +P ++ ++TFY+ F +P GKY + +C
Sbjct: 37 GSLIAVMNDAQ-EIFGYLPIEVQLFISQEMKVPLTEIFGISTFYSRFTLKPSGKYKINLC 95
Query: 440 TTTPCWLRGSDAILNAIKQETNCRLEAT 523
T C++RG+ +L IK++ + T
Sbjct: 96 MGTACYVRGAAMLLEKIKEKLGIEVGET 123
Score = 44.8 bits (101), Expect = 0.003
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
VG + GKFS+ CLGAC AP++ +N + + L+ D EI+ K +
Sbjct: 120 VGETTEDGKFSLEPTRCLGACALAPVMMINGEVFGRLTPNDVDEILKKFE 169
>UniRef50_Q608Y0 Cluster: NADH dehydrogenase I, E subunit; n=5;
Bacteria|Rep: NADH dehydrogenase I, E subunit -
Methylococcus capsulatus
Length = 157
Score = 60.5 bits (140), Expect = 5e-08
Identities = 27/80 (33%), Positives = 45/80 (56%)
Frame = +2
Query: 233 GHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRP 412
GH P S A I L++ QR S GW+ + ++AE+L + + +ATFY + RRP
Sbjct: 16 GHFPHPS--AAAIEALNIVQR-SHGWISDELLQEIAELLGMSPAELDSIATFYNLIYRRP 72
Query: 413 IGKYHVQVCTTTPCWLRGSD 472
+G+ + C + CW+ G++
Sbjct: 73 VGRRVIHYCNSVSCWMLGAE 92
>UniRef50_Q1PYY2 Cluster: Similar to nuoE subunit of the
NADH:ubiquinone oxidoreductase; n=2; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to nuoE subunit of the
NADH:ubiquinone oxidoreductase - Candidatus Kuenenia
stuttgartiensis
Length = 162
Score = 59.7 bits (138), Expect = 9e-08
Identities = 28/77 (36%), Positives = 48/77 (62%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
R+ +IP+L Q + G +LP++AM +V+ ++P R+Y V TFY+ F + P GK+
Sbjct: 27 RAASNDLIPILQEMQEEYG-YLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSQVPRGKHT 85
Query: 428 VQVCTTTPCWLRGSDAI 478
V++C T C ++G+ I
Sbjct: 86 VRLCAGTACHIKGAPDI 102
Score = 43.2 bits (97), Expect = 0.009
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEII 648
G +P KF+ V CLG C AP++ ++D YY L+ E T+EI+
Sbjct: 115 GETTPDYKFTHKTVACLGTCFLAPVMMIDDRYYGKLTEEKTEEIL 159
>UniRef50_A7HII1 Cluster: NADH-quinone oxidoreductase, E subunit;
n=2; Anaeromyxobacter|Rep: NADH-quinone oxidoreductase,
E subunit - Anaeromyxobacter sp. Fw109-5
Length = 188
Score = 59.7 bits (138), Expect = 9e-08
Identities = 31/79 (39%), Positives = 43/79 (54%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
AM+P L + Q + G+L + A+ L R EVATFY MF RPIG++ V+VCT
Sbjct: 57 AMLPALRIGQ-EIFGYLTPAVQRLAADRLGTSPARAEEVATFYVMFNTRPIGRHLVEVCT 115
Query: 443 TTPCWLRGSDAILNAIKQE 499
C L G D + +K +
Sbjct: 116 NVSCCLTGGDRLFEYLKHK 134
Score = 48.8 bits (111), Expect = 2e-04
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
GG S G+ ++ EVECLGAC AP + V+++ YE L + +EI+ +L+
Sbjct: 140 GGTSQDGRVTLREVECLGACGTAPAMLVDEEMYERLDPKKVEEILGRLE 188
>UniRef50_Q67P18 Cluster: NADH dehydrogenase I subunit E; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase I
subunit E - Symbiobacterium thermophilum
Length = 274
Score = 59.3 bits (137), Expect = 1e-07
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQ-SGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHV 430
+R A++PLL LA R+ G ++ S + VAEI + V V +FYTMF R+P+GKY +
Sbjct: 30 ERSAILPLLHLAMREREGRYIAQSDIEAVAEICGVAPSYVQSVCSFYTMFRRQPVGKYLI 89
Query: 431 QVCTTTPCWL 460
VC C L
Sbjct: 90 TVCGNMACHL 99
Score = 33.9 bits (74), Expect = 5.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEV-ECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKP 675
VG +P G ++ ECL AC AP+I V+ +Y ++ E +++ L+ E P
Sbjct: 118 VGETTPDGLITLEVTGECLAACDLAPVIHVDTEYVVKVTREKFDALVAALRAGEGP 173
>UniRef50_Q3A640 Cluster: NADH:ubiquinone oxidoreductase 24 kD
subunit; n=1; Pelobacter carbinolicus DSM 2380|Rep:
NADH:ubiquinone oxidoreductase 24 kD subunit -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 159
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/96 (29%), Positives = 52/96 (54%)
Frame = +2
Query: 266 MIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTT 445
+IPLL+ Q G +LP+S ++E ++ R+Y V TFY+ F ++ VQ+C
Sbjct: 29 LIPLLEKVQELLG-YLPLSIQEYISEKTHISPNRIYGVVTFYSFFTMEARARHRVQLCLG 87
Query: 446 TPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQR 553
T C+++G+DA++ I+ + + F F++
Sbjct: 88 TACYVKGADAMVEKIENDYQINFGESTEDGRFTFEK 123
>UniRef50_Q3A461 Cluster: NADP-reducing hydrogenase chain A; n=5;
Deltaproteobacteria|Rep: NADP-reducing hydrogenase chain
A - Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 173
Score = 59.3 bits (137), Expect = 1e-07
Identities = 31/91 (34%), Positives = 52/91 (57%)
Frame = +2
Query: 227 FVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIR 406
FV LP ++ G ++ +L AQ G +LP VA+ + + +VY V +FYT F
Sbjct: 32 FVATLP--TKEGHLVTVLHKAQSLFG-YLPKEVQEFVADHMEVSLAQVYGVVSFYTFFTM 88
Query: 407 RPIGKYHVQVCTTTPCWLRGSDAILNAIKQE 499
P GK+ + VC T C+++G+D +++A K +
Sbjct: 89 IPKGKHPISVCMGTACFVKGADKVVDAFKNQ 119
Score = 39.9 bits (89), Expect = 0.080
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIIS 651
GKFS+ + C+GAC AP++ V + Y +++ + K+II+
Sbjct: 131 GKFSIDCLRCVGACALAPVVLVGEKVYANVTPDQVKDIIA 170
>UniRef50_Q1PW48 Cluster: Similar to NADH:ubiquinone oxidoreductase
24 kDa subunit, mitochondrial; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to NADH:ubiquinone
oxidoreductase 24 kDa subunit, mitochondrial -
Candidatus Kuenenia stuttgartiensis
Length = 152
Score = 59.3 bits (137), Expect = 1e-07
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A IP+L Q + G +LP+ + +V E + K +Y VATFY F P G+ ++VC
Sbjct: 19 ASIPILQSIQEEYG-YLPLDVLDQVCEESEITKSHLYGVATFYAQFKLTPKGRNAIKVCK 77
Query: 443 TTPCWLRGSDAILNAIKQETNCRLEAT 523
T C ++G+D + A+K + ++ T
Sbjct: 78 GTACHVKGADITIVAMKDQLGIDIDQT 104
Score = 37.5 bits (83), Expect = 0.43
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKD 666
G FS+ V CLG C AP+I +N+D + S + + K K+
Sbjct: 108 GAFSMETVACLGCCSLAPVIMINEDVFGGFSSAKVRGTLKKYGKE 152
>UniRef50_A1AVR6 Cluster: NADH-quinone oxidoreductase, E subunit;
n=2; sulfur-oxidizing symbionts|Rep: NADH-quinone
oxidoreductase, E subunit - Ruthia magnifica subsp.
Calyptogena magnifica
Length = 157
Score = 59.3 bits (137), Expect = 1e-07
Identities = 24/46 (52%), Positives = 34/46 (73%)
Frame = +1
Query: 523 SPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
+P G SV +VECLGACV APM Q+ND+Y+E+L+ + +I+ LK
Sbjct: 112 TPDGLISVKKVECLGACVGAPMFQINDEYFENLTFDKIDKIVDNLK 157
Score = 55.6 bits (128), Expect = 2e-06
Identities = 26/93 (27%), Positives = 48/93 (51%)
Frame = +2
Query: 203 GQSKESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVA 382
G K+ ++ P + A++ L + Q ++ L + VA+ L++P + V EVA
Sbjct: 5 GAKKQIDAWIAKYPKDRKSSAVMQTLKIIQAENENKLSADTIQAVADYLDMPDIAVQEVA 64
Query: 383 TFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAIL 481
TFY + + +GKY ++ C C L G+D ++
Sbjct: 65 TFYENYNHKKVGKYVIRFCHNISCMLNGADDLI 97
>UniRef50_Q0AWA4 Cluster: NADH:ubiquinone oxidoreductase 24 kD
subunit NuoE precursor; n=1; Syntrophomonas wolfei
subsp. wolfei str. Goettingen|Rep: NADH:ubiquinone
oxidoreductase 24 kD subunit NuoE precursor -
Syntrophomonas wolfei subsp. wolfei (strain Goettingen)
Length = 166
Score = 58.8 bits (136), Expect = 2e-07
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +2
Query: 308 WLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNA 487
+LP SA+ AE + +P +VY +ATFY F +P G+++++VC T C ++GS+ +L+
Sbjct: 40 YLPRSALELTAEYVGVPFSQVYSMATFYRAFSLQPRGRFNIKVCDGTTCHIKGSNILLDE 99
Query: 488 IKQETNCRLEATVLVESFPFQRLN 559
I + T F + +N
Sbjct: 100 IHKNLGIGPGETTADREFSLETVN 123
Score = 37.5 bits (83), Expect = 0.43
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 535 KFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
+FS+ V C+GAC AP + VN+ Y ++ KEII + +
Sbjct: 116 EFSLETVNCIGACAIAPALLVNERVYPRVNAAALKEIIKEYR 157
>UniRef50_A5FS13 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=3; Dehalococcoides|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Dehalococcoides sp. BAV1
Length = 154
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/98 (31%), Positives = 51/98 (52%)
Frame = +2
Query: 266 MIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTT 445
+IP+L LA +++ +L M KVA + +P+ VY +ATFY+ F P G + V VC
Sbjct: 23 LIPIL-LAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRG 81
Query: 446 TPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQRLN 559
T C + G++ +L I++ + T L +N
Sbjct: 82 TACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTIN 119
>UniRef50_Q89AU3 Cluster: NADH-quinone oxidoreductase subunit E;
n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
NADH-quinone oxidoreductase subunit E - Buchnera
aphidicola subsp. Baizongia pistaciae
Length = 171
Score = 58.4 bits (135), Expect = 2e-07
Identities = 30/105 (28%), Positives = 58/105 (55%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
R+ R ++I +L Q+ S GW+ + ++A IL + K + E+ATFY+ R+PIG+
Sbjct: 35 RTVRSSLIEILKFVQK-SYGWISNELITELACILKISKCDIEEIATFYSQIFRQPIGRNI 93
Query: 428 VQVCTTTPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQRLNV 562
++ C + C++ G + I ++++ N + T + F F L +
Sbjct: 94 IKYCDSVVCYVNGCEKIRCSLEKNLNVNVGET--TKDFKFTLLPI 136
Score = 37.9 bits (84), Expect = 0.32
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +1
Query: 427 CPSMYDYPLLASRL*CHIECN*TGNKL*VGGNSPCGKFSVSEVECLGACVNAPMIQVNDD 606
C S+ Y ++ C +E N N VG + KF++ + CLG C +P I +NDD
Sbjct: 97 CDSVVCYVNGCEKIRCSLEKNLNVN---VGETTKDFKFTLLPICCLGNCDKSPTIMINDD 153
Query: 607 YYEDLS 624
Y +++
Sbjct: 154 LYSNVT 159
>UniRef50_Q4AMU5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Chlorobium phaeobacteroides BS1|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit - Chlorobium
phaeobacteroides BS1
Length = 195
Score = 57.6 bits (133), Expect = 4e-07
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A +PLL Q + G +LP AM + ++ ++Y VATFY+ F P+G++ ++VC
Sbjct: 28 AAVPLLQAVQNEYG-YLPREAMDIIVAETDVGASQLYGVATFYSQFRLDPVGRHVIKVCH 86
Query: 443 TTPCWLRGSDAILNAIKQETNCRLE 517
T C + G+D I A++Q + E
Sbjct: 87 GTACHVSGADRINTALRQSLGIKNE 111
Score = 33.9 bits (74), Expect = 5.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISK 654
G ++V +V C+G C AP++ + D+ + +L D + + K
Sbjct: 119 GSYTVEDVACIGCCSLAPVMVIGDETFGNLKGTDAQRSLKK 159
>UniRef50_Q1NQY7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=5; Bacteria|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - delta proteobacterium
MLMS-1
Length = 200
Score = 57.6 bits (133), Expect = 4e-07
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQ 433
Q G +I L Q QS G++ AM ++A L LP +VY V TFY F +P G++
Sbjct: 33 QAGGLIEALHAVQ-QSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKGRHSCV 91
Query: 434 VCTTTPCWLRGSDAILNAI 490
VC T C+++G+ IL I
Sbjct: 92 VCLGTACYIKGAAEILGDI 110
>UniRef50_A5UZ48 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=10; Bacteria|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Roseiflexus sp. RS-1
Length = 178
Score = 57.6 bits (133), Expect = 4e-07
Identities = 33/78 (42%), Positives = 46/78 (58%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A+I +L AQ + G+L + +A L+LP RVY VATFY F P G++ VC
Sbjct: 39 ALIEVLHRAQ-ELFGYLSTDLLLFIANSLHLPPSRVYGVATFYHFFSLAPKGEHSCVVCL 97
Query: 443 TTPCWLRGSDAILNAIKQ 496
T C++RG+ AIL A +Q
Sbjct: 98 GTACYVRGAAAILAAAEQ 115
>UniRef50_A4J528 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Desulfotomaculum reducens MI-1|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit -
Desulfotomaculum reducens MI-1
Length = 158
Score = 57.6 bits (133), Expect = 4e-07
Identities = 26/71 (36%), Positives = 44/71 (61%)
Frame = +2
Query: 287 AQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 466
A ++S G+LP + + AE L +P VY VATFY F RP G++ V +C T C+++G
Sbjct: 34 AIQESQGYLPKDLLVRTAEELGVPLSDVYGVATFYAAFSLRPRGRHSVNLCLGTACYVKG 93
Query: 467 SDAILNAIKQE 499
+ + + +++E
Sbjct: 94 APEVQSMLEKE 104
Score = 41.5 bits (93), Expect = 0.026
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISK 654
G + +FS+ V CLGAC AP++ VN + Y ++ E E++SK
Sbjct: 110 GNTTEDRRFSLDLVRCLGACGIAPVLTVNGEVYPRMTAEKVTEVLSK 156
>UniRef50_Q1IS36 Cluster: NADH-quinone oxidoreductase, E subunit;
n=1; Acidobacteria bacterium Ellin345|Rep: NADH-quinone
oxidoreductase, E subunit - Acidobacteria bacterium
(strain Ellin345)
Length = 160
Score = 57.2 bits (132), Expect = 5e-07
Identities = 31/88 (35%), Positives = 49/88 (55%)
Frame = +2
Query: 233 GHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRP 412
GH P ++R ++P L Q + G +L A+ ++A + L + V V ++Y+M +P
Sbjct: 16 GHYP--TKRSPLVPFLLYVQDEVG-YLSDEAIVEIANRVELTPLEVRNVISYYSMLRTKP 72
Query: 413 IGKYHVQVCTTTPCWLRGSDAILNAIKQ 496
IGKY+VQVCT C RG + I K+
Sbjct: 73 IGKYNVQVCTNICCLQRGGEDIFEHCKK 100
Score = 52.8 bits (121), Expect = 1e-05
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +1
Query: 523 SPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEK 672
+P G FS+ EVEC+GAC AP +QVN D++E+L+ E +I +K E+
Sbjct: 110 TPDGLFSLEEVECIGACSWAPAVQVNYDFHENLTPETMDAVIESYRKREQ 159
>UniRef50_A0UVM6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Clostridium cellulolyticum H10|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit - Clostridium
cellulolyticum H10
Length = 163
Score = 57.2 bits (132), Expect = 5e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +2
Query: 275 LLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPC 454
+L+L LP + VAE L++P +VY V TFY+MF P G+Y V+VC + PC
Sbjct: 29 MLELQSMSGTNSLPHEWVVFVAEALDMPVSKVYSVITFYSMFGTEPRGRYLVEVCKSGPC 88
Query: 455 WLRGSDAILNAIKQE 499
+ G+ +L ++++
Sbjct: 89 HVSGAKNVLQLLEEK 103
Score = 33.5 bits (73), Expect = 6.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE 669
F++ + C GAC AP I++ + Y +L+ E EI+ ++ +
Sbjct: 117 FTLIQSSCFGACDIAPAIKIGEKVYGNLTSEKLSEIVDSYREGQ 160
>UniRef50_Q6FE68 Cluster: NADH dehydrogenase I chain E; n=5;
Moraxellaceae|Rep: NADH dehydrogenase I chain E -
Acinetobacter sp. (strain ADP1)
Length = 170
Score = 56.4 bits (130), Expect = 9e-07
Identities = 28/100 (28%), Positives = 55/100 (55%)
Frame = +2
Query: 200 AGQSKESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEV 379
A + E + H P R A + L QR++G W+ + M+ +A++L++ + V
Sbjct: 20 ADEIHEIEHHIHHYP--YPRAASLDALKCVQRRNG-WVDDAQMNAIAQMLSISVADLEGV 76
Query: 380 ATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQE 499
ATFY R+P+G++ + +C + C+L G++ + A ++E
Sbjct: 77 ATFYNRIYRQPVGRHVILLCDSIACFLMGAETLAEAFQRE 116
>UniRef50_Q1PWG7 Cluster: Similar to to proton-translocating NADH
dehydrogenase I, 24 kDa subunit; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Similar to to
proton-translocating NADH dehydrogenase I, 24 kDa
subunit - Candidatus Kuenenia stuttgartiensis
Length = 164
Score = 56.4 bits (130), Expect = 9e-07
Identities = 29/100 (29%), Positives = 54/100 (54%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
RG++IP+L Q + G+LP + V+E LN+ + VATFY F RP G++ ++
Sbjct: 30 RGSLIPILQTIQT-AYGYLPEKVVDFVSERLNISVNEIIGVATFYAQFHMRPRGRHIIKA 88
Query: 437 CTTTPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQRL 556
C+ T C ++G+ I+ + ++ + + T F + +
Sbjct: 89 CSGTACHVKGAKQIIEKLGKKLDIPVGETTKDTMFTLEEV 128
Score = 40.3 bits (90), Expect = 0.060
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
VG + F++ EV CLGAC AP+I V++D Y L II ++K
Sbjct: 114 VGETTKDTMFTLEEVACLGACSLAPVIMVDEDVYGQLLHNTVGNIIDEIK 163
>UniRef50_Q5BT40 Cluster: SJCHGC02806 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC02806 protein - Schistosoma
japonicum (Blood fluke)
Length = 82
Score = 56.0 bits (129), Expect = 1e-06
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYY 612
G +P F+++EVECLGACVNAPM+Q+NDDYY
Sbjct: 23 GQTTPDKMFTLTEVECLGACVNAPMLQINDDYY 55
>UniRef50_Q9RU91 Cluster: NADH dehydrogenase I, E subunit; n=2;
Deinococcus|Rep: NADH dehydrogenase I, E subunit -
Deinococcus radiodurans
Length = 207
Score = 55.6 bits (128), Expect = 2e-06
Identities = 27/77 (35%), Positives = 45/77 (58%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
+ +R A++PLL Q + G++ + ++AE+ V V +FY+ + P G+YH
Sbjct: 23 QGRRSALMPLLREVQ-DAEGFVAAPRLAEIAELCGTTATEVRSVMSFYSTYHTVPTGRYH 81
Query: 428 VQVCTTTPCWLRGSDAI 478
+QVC+T C L GSDA+
Sbjct: 82 LQVCSTLMCALAGSDAL 98
Score = 55.2 bits (127), Expect = 2e-06
Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDD-YYEDLSVEDTKEIISKLKKDEKP 675
G +P G+FSV +VECLG+C AP++Q+ND+ +YE + E+++ L+ D+KP
Sbjct: 111 GEVTPDGRFSVQKVECLGSCGTAPVLQLNDEGFYERVGPARLAELLAALQADQKP 165
>UniRef50_Q98BW7 Cluster: NAD-dependent formate dehydrogenase gamma
subunit; n=15; Proteobacteria|Rep: NAD-dependent formate
dehydrogenase gamma subunit - Rhizobium loti
(Mesorhizobium loti)
Length = 159
Score = 55.2 bits (127), Expect = 2e-06
Identities = 29/79 (36%), Positives = 46/79 (58%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
G ++P+L Q + G +P +A+ +A+ LNL + V+ V TFY F RP G++ +++C
Sbjct: 26 GPLLPILHEIQDEFGH-VPQAALPVIADGLNLSRAEVHGVVTFYHDFRARPAGRHVLKLC 84
Query: 440 TTTPCWLRGSDAILNAIKQ 496
C GSDA+ IKQ
Sbjct: 85 QAEACQSMGSDAVAAKIKQ 103
>UniRef50_Q2FP98 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Methanospirillum hungatei JF-1|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 160
Score = 55.2 bits (127), Expect = 2e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Frame = +2
Query: 311 LPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAI 490
+P+ + V+E L+LP ++ + TFY+ F +P+G++ + VC TPC ++G++ IL +
Sbjct: 34 IPMDTLKLVSEKLDLPLSELFALVTFYSFFSLKPVGEHLITVCMGTPCHVKGAEKILETL 93
Query: 491 KQ 496
++
Sbjct: 94 EE 95
>UniRef50_Q0AVX7 Cluster: Fe-hydrogenase, gamma subunit; n=4;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
Fe-hydrogenase, gamma subunit - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 148
Score = 54.8 bits (126), Expect = 3e-06
Identities = 24/88 (27%), Positives = 50/88 (56%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
G +I Q++ ++P A+ A++ ++P+ + Y VATFY+ P GK +++C
Sbjct: 16 GGIIEAYHAVQKEYS-YIPEDAVVYAAQVFDIPEAKAYGVATFYSYLKVGPRGKNVIRIC 74
Query: 440 TTTPCWLRGSDAILNAIKQETNCRLEAT 523
+ PC + G+D ++ A+++E ++ T
Sbjct: 75 ESAPCHIAGADKVVAALEKELGIKMGET 102
Score = 40.7 bits (91), Expect = 0.046
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
+G +P GKF++ EC+G C P+I +N Y D++ + I+++ K
Sbjct: 99 MGETTPDGKFTLEFAECVGQCQATPVITINSQPYGDVTADKIAAILTEYK 148
>UniRef50_A0LLS9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Syntrophobacter fumaroxidans MPOB|Rep:
NADH dehydrogenase (Ubiquinone), 24 kDa subunit -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 151
Score = 54.8 bits (126), Expect = 3e-06
Identities = 34/98 (34%), Positives = 47/98 (47%)
Frame = +2
Query: 206 QSKESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVAT 385
+ K R F H +R A+IP+L Q + G +LP AM A + VY V+T
Sbjct: 2 KDKLQRIFTRH---DRKRDALIPVLQDIQGEFG-YLPPHAMQAAARHCRTSAVEVYGVST 57
Query: 386 FYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQE 499
FY F P+G++ V VC T C + G IL K +
Sbjct: 58 FYAQFKFSPVGRHTVTVCQGTACHVMGGHRILEECKSQ 95
Score = 37.5 bits (83), Expect = 0.43
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIIS 651
G +P G F++ V C+GAC +P + V+ D Y + E EI++
Sbjct: 101 GQTTPDGMFTLETVACIGACALSPAVVVDKDTYGRMKPERITEILN 146
>UniRef50_A0LJN9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=3; Deltaproteobacteria|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 163
Score = 54.8 bits (126), Expect = 3e-06
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +2
Query: 305 GWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILN 484
G++ AM + A IL + + + E+ATFY R P+G+Y + VC + CW+ G I++
Sbjct: 36 GYMTDEAMEEAAGILGMTTLELEELATFYDHIYRSPVGRYVIHVCDSAVCWMEGYQRIID 95
Query: 485 AIKQETNCRLEAT 523
+ Q + T
Sbjct: 96 YLCQRLKLTVGGT 108
Score = 42.7 bits (96), Expect = 0.011
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 502 KL*VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 657
KL VGG SP G F++ V C+G C AP + +N + Y L+ E I+ +L
Sbjct: 102 KLTVGGTSPDGLFTLLPVCCIGYCDRAPAMMINRNVYGRLTREKIDRILDRL 153
>UniRef50_A0LGJ1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=2; Bacteria|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 162
Score = 54.8 bits (126), Expect = 3e-06
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +2
Query: 242 P*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGK 421
P R Q ++I +L AQ G +LP +VAE L L +Y V TFY F P G+
Sbjct: 23 PYRGQPNSLIQVLAKAQEYIG-YLPKWVQVQVAEGLGLSLQEIYGVTTFYAFFSLIPRGR 81
Query: 422 YHVQVCTTTPCWLRGSDAILNAIK 493
+ + VC T C+++G+ +L ++
Sbjct: 82 HKLSVCAGTACYVKGTKNVLKGVR 105
Score = 35.1 bits (77), Expect = 2.3
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVN-DDYYEDLSVEDTKEIIS 651
G +P +F++ V C+GAC AP + VN D + L E EI+S
Sbjct: 113 GQTTPDSRFTMEIVRCIGACGLAPAVIVNGKDVHGRLEAEQIPEILS 159
>UniRef50_Q4AHT8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Chlorobium phaeobacteroides BS1|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit - Chlorobium
phaeobacteroides BS1
Length = 172
Score = 54.4 bits (125), Expect = 3e-06
Identities = 28/84 (33%), Positives = 48/84 (57%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
+ ++G +IP+L Q G++P A K+ E + L +Y VATFY F P+GK+
Sbjct: 31 QGKKGNLIPVLQGVQ-SIFGYVPREAFIKLNEEMGLQLSDMYGVATFYAQFRLNPVGKHI 89
Query: 428 VQVCTTTPCWLRGSDAILNAIKQE 499
++VC T C ++ + I A+++E
Sbjct: 90 IKVCHGTACHVQSATKITEALEKE 113
Score = 33.9 bits (74), Expect = 5.3
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE 669
F++ V CLG C AP++ + D+ + L+ + +I +++ E
Sbjct: 127 FTLESVACLGCCSLAPVMMIGDETFGSLNGKKAARVIKDIRRKE 170
>UniRef50_Q0PIE2 Cluster: NAD(P)H-quinone oxidoreductase 24 kDa
subunit; n=1; Heliobacillus mobilis|Rep: NAD(P)H-quinone
oxidoreductase 24 kDa subunit - Heliobacillus mobilis
Length = 171
Score = 54.0 bits (124), Expect = 5e-06
Identities = 29/104 (27%), Positives = 50/104 (48%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
+ QR + L D+ + ++P +M +A+ L LP ++Y +ATFY RP GK+
Sbjct: 21 KEQRYTLAMLQDIQKEFQ--FIPRESMELIADYLELPLSKIYSLATFYKALSLRPKGKHV 78
Query: 428 VQVCTTTPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQRLN 559
+++C T C +R S + N + R T F + +N
Sbjct: 79 IKICDGTACHIRSSQMLANELYTLLKIRPGETTEDGQFSIEMVN 122
Score = 41.1 bits (92), Expect = 0.035
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +1
Query: 502 KL*VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISK 654
K+ G + G+FS+ V CLGAC AP+I +++ +Y ++ +EII++
Sbjct: 104 KIRPGETTEDGQFSIEMVNCLGACAIAPVIVIDETFYGKVTPAKLQEIIAQ 154
>UniRef50_Q6SGN4 Cluster: NADH-quinone oxidoreductase, E subunit;
n=1; uncultured bacterium 463|Rep: NADH-quinone
oxidoreductase, E subunit - uncultured bacterium 463
Length = 167
Score = 53.6 bits (123), Expect = 6e-06
Identities = 27/98 (27%), Positives = 47/98 (47%)
Frame = +2
Query: 230 VGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRR 409
+ H+P R I L + Q G W+ ++ +A L++ + +ATFY + RR
Sbjct: 25 IAHVPYRD--AVAIDALKIVQAHRG-WVSDESLSAIAAHLHMSADELDGIATFYNLIYRR 81
Query: 410 PIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
P+G + +C + CW++G D + I +E L T
Sbjct: 82 PVGDKVILLCNSISCWIKGCDNLQQRITEELGVELGET 119
Score = 37.5 bits (83), Expect = 0.43
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEII 648
+G + ++++ V CLGAC AP++ V D+ +EDL E I+
Sbjct: 116 LGETTSDNRYTLLPVTCLGACDKAPVMMVGDELHEDLCEESIIRIL 161
>UniRef50_A6PPY8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Victivallis vadensis ATCC BAA-548|Rep:
NADH dehydrogenase (Ubiquinone), 24 kDa subunit -
Victivallis vadensis ATCC BAA-548
Length = 170
Score = 53.6 bits (123), Expect = 6e-06
Identities = 29/78 (37%), Positives = 44/78 (56%)
Frame = +2
Query: 266 MIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTT 445
+IP+L Q +L + VA + +P RVY VATFY F +P GKY +++C
Sbjct: 32 LIPILQEVQAVYK-YLSKDMISYVATSIGVPPSRVYGVATFYAHFSMQPKGKYIIKLCDG 90
Query: 446 TPCWLRGSDAILNAIKQE 499
T C ++ S ILNA+ ++
Sbjct: 91 TACHVKKSHGILNALYEK 108
Score = 40.7 bits (91), Expect = 0.046
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEK 672
F++ V CLGAC AP++ VN++ Y + E EI+ ++ +EK
Sbjct: 123 FTIETVSCLGACGLAPVMVVNEEVYGQCTPEKAIEIVDRIIAEEK 167
>UniRef50_A1ALP3 Cluster: NADH-quinone oxidoreductase, E subunit;
n=1; Pelobacter propionicus DSM 2379|Rep: NADH-quinone
oxidoreductase, E subunit - Pelobacter propionicus
(strain DSM 2379)
Length = 154
Score = 53.6 bits (123), Expect = 6e-06
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +2
Query: 335 VAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQE 499
+A L LP M+V E T+YTMF R P+G + ++VC C L G++ I++ + Q+
Sbjct: 46 IANYLGLPAMQVKEALTWYTMFYRHPVGTHVIKVCRNIACSLMGAERIIDHLSQK 100
Score = 40.7 bits (91), Expect = 0.046
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 657
G + G+F++ VECL +C AP++Q++D Y+E L+ +I+ L
Sbjct: 106 GETTADGRFTLLLVECLASCGTAPVMQIDDTYHEQLTEAKIDQILKGL 153
>UniRef50_A7IL17 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa
subunit; n=3; Alphaproteobacteria|Rep: NADH
dehydrogenase (Ubiquinone) 24 kDa subunit - Xanthobacter
sp. (strain Py2)
Length = 176
Score = 52.8 bits (121), Expect = 1e-05
Identities = 29/92 (31%), Positives = 49/92 (53%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
R GA +P+L Q ++ G++P A+ +AE LNL + VY V TFY F R G++
Sbjct: 32 RHLEGATMPILHALQ-ETFGFVPDPAVPMIAESLNLSRAEVYGVLTFYHDFRREAPGRHV 90
Query: 428 VQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
V++C C G A+ ++++ + +T
Sbjct: 91 VKLCAAEACQSVGGKALAQYVEEKLGVDMGST 122
>UniRef50_O13691 Cluster: Probable NADH-ubiquinone oxidoreductase 24
kDa subunit, mitochondrial precursor; n=1;
Schizosaccharomyces pombe|Rep: Probable NADH-ubiquinone
oxidoreductase 24 kDa subunit, mitochondrial precursor -
Schizosaccharomyces pombe (Fission yeast)
Length = 162
Score = 52.8 bits (121), Expect = 1e-05
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 218 SRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY-T 394
++ + P R Q A++PLLDLAQRQ G W+P +AM+++A + + V+ + Y
Sbjct: 15 AKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVHSLILAYPN 74
Query: 395 MFIRRPIGKYHVQVCTTTPC 454
F RP K V++C + C
Sbjct: 75 DFFWRP-KKPRVRICNSWMC 93
>UniRef50_Q6N1Z1 Cluster: NADH-ubiquinone dehydrogenase chain E;
n=8; Alphaproteobacteria|Rep: NADH-ubiquinone
dehydrogenase chain E - Rhodopseudomonas palustris
Length = 162
Score = 52.4 bits (120), Expect = 1e-05
Identities = 23/78 (29%), Positives = 44/78 (56%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
+ AM+ L L Q ++ GW+ + + + A++L + + +ATFY+ R P+G + +
Sbjct: 22 KAAMVEALKLVQ-EAEGWVSDAHLKEAADVLGVTPAEIDALATFYSQIFRSPVGDTVILL 80
Query: 437 CTTTPCWLRGSDAILNAI 490
C C+L G DA+ +A+
Sbjct: 81 CDGLSCYLCGGDAVRDAV 98
>UniRef50_Q7NZH7 Cluster: NADH-ubiquinone oxidoreductase, chain E;
n=8; Betaproteobacteria|Rep: NADH-ubiquinone
oxidoreductase, chain E - Chromobacterium violaceum
Length = 166
Score = 52.0 bits (119), Expect = 2e-05
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 335 VAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 466
VA L + + YEVATFY M+ +P+GK+ + VCT PC L G
Sbjct: 57 VANYLGIAPVAAYEVATFYNMYDMKPVGKFKITVCTNLPCALSG 100
Score = 33.5 bits (73), Expect = 6.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVND 603
+G S G +++ E EC+GAC +AP++ VN+
Sbjct: 116 IGETSADGMYTLLEGECMGACGDAPVLLVNN 146
>UniRef50_A0J5R7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Shewanella woodyi ATCC 51908|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit - Shewanella
woodyi ATCC 51908
Length = 179
Score = 52.0 bits (119), Expect = 2e-05
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
G I L L Q + G W+ +++H ++ +P + VATFY + R+P+GK + C
Sbjct: 41 GITIDALKLIQAERG-WVSDASLHALSLYTQIPVADLDSVATFYNLIFRQPVGKVVLHPC 99
Query: 440 TTTPCWLRGSDAILNAIKQETN 505
C L G + I +KQ+ N
Sbjct: 100 DGISCDLMGGEHIRQCLKQQLN 121
Score = 35.1 bits (77), Expect = 2.3
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 657
G + +F++ + CLGAC AP++ N +E+++ ++ +++S L
Sbjct: 125 GETTTDNRFTLIPLPCLGACDKAPVMIANKQLFENMTTDELPKLLSTL 172
>UniRef50_Q749M0 Cluster: NAD-reducing hydrogenase, putative; n=4;
Bacteria|Rep: NAD-reducing hydrogenase, putative -
Geobacter sulfurreducens
Length = 191
Score = 51.6 bits (118), Expect = 2e-05
Identities = 30/87 (34%), Positives = 47/87 (54%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A++ +L +AQ ++ G L M VA L +P RVY VATFY F G++ VCT
Sbjct: 38 ALLEVLHVAQ-ETFGCLSDELMTHVARQLRVPPSRVYGVATFYHFFTLEARGEHSCVVCT 96
Query: 443 TTPCWLRGSDAILNAIKQETNCRLEAT 523
T C+++ S I+ ++ E + + T
Sbjct: 97 GTACYVKRSAEIVTRLENEFDVKAGKT 123
>UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=2;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 638
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
+++ M L DL L ++ VAE +NLP+ V FYTMF RP K+
Sbjct: 46 KAREHLMAILRDLENLSGNQQLSPETLNAVAEAMNLPQSTVAGFVGFYTMFSTRPRAKFL 105
Query: 428 VQVCTTTPCWLRGSDAILNAIKQ 496
++VC + PC + G+ I + +++
Sbjct: 106 IRVCKSGPCHVMGARTIFDYVEK 128
Score = 33.1 bits (72), Expect = 9.2
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRS 693
G + G F + ECLG C AP + +N D + +L+ E I+ + E P
Sbjct: 135 GQTTADGLFHLEACECLGICSVAPAMMINYDLHGNLTEERIATILDGYRSRE-----PFF 189
Query: 694 GRFASEPLGGLTSLTEEP 747
G + G + +EP
Sbjct: 190 GEACGPEVEGRVCMLDEP 207
>UniRef50_A4M6K3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=2; Bacteria|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Petrotoga mobilis SJ95
Length = 154
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/67 (34%), Positives = 42/67 (62%)
Frame = +2
Query: 293 RQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 472
+++ G++ + ++A+ ++PK R+Y V +FY+MF P GKY V+VC + C L S
Sbjct: 32 QETYGFISEEDILRIAQKRDIPKARLYGVISFYSMFHLEPTGKYIVRVCDSVSCRLNESA 91
Query: 473 AILNAIK 493
++ A+K
Sbjct: 92 DLVRALK 98
Score = 41.1 bits (92), Expect = 0.035
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 535 KFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
KF++ ECLG C P++ VND YY L+V +I+ L+
Sbjct: 113 KFTLEVAECLGHCDEGPVMMVNDTYYTHLTVTKAIQILDSLE 154
>UniRef50_Q89QJ0 Cluster: NADH dehydrogenase I chain E; n=16;
Alphaproteobacteria|Rep: NADH dehydrogenase I chain E -
Bradyrhizobium japonicum
Length = 162
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQ 433
Q GA + +L Q + G++P +A+ VA+ LNL + V+ V TFY F +P G++ ++
Sbjct: 27 QEGATLVILHALQA-AFGYVPEAAIPMVAQALNLSRAEVHGVFTFYHDFRHKPAGRHVLK 85
Query: 434 VCTTTPCWLRGSDAI 478
+C C G DA+
Sbjct: 86 LCRAEACQAAGGDAL 100
>UniRef50_O66842 Cluster: NADH-quinone oxidoreductase subunit E;
n=2; Aquifex aeolicus|Rep: NADH-quinone oxidoreductase
subunit E - Aquifex aeolicus
Length = 160
Score = 50.8 bits (116), Expect = 4e-05
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +2
Query: 305 GWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILN 484
G++P ++ +A++L LP V V FY MF R KY ++VC + C L G++ +L
Sbjct: 42 GYIPPESLKPLADMLELPLNHVEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTNKLLK 101
Query: 485 AIK 493
A++
Sbjct: 102 ALE 104
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISK 654
G +P GKF + V+CLGAC AP+ VNDD Y+ S EI+S+
Sbjct: 112 GEVTPDGKFKIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSR 158
>UniRef50_Q2C5T5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=2; Vibrionaceae|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Photobacterium sp. SKA34
Length = 188
Score = 50.4 bits (115), Expect = 6e-05
Identities = 26/91 (28%), Positives = 51/91 (56%)
Frame = +2
Query: 230 VGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRR 409
+ H P + GA+ L + + G++ +++ V+E+ +L ++ E+ TFYT+ RR
Sbjct: 14 IAHYP-EKRAGAIYCLYFMQDKY--GYITKPSLNLVSELTDLSTTQLDELITFYTLLRRR 70
Query: 410 PIGKYHVQVCTTTPCWLRGSDAILNAIKQET 502
P+G+ ++VC + C RG+ +L A + T
Sbjct: 71 PVGRNIMRVCDSISCHTRGAKKVLEAAENAT 101
Score = 33.1 bits (72), Expect = 9.2
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYE-DLSVEDTKEIISKLKKDE 669
G +V CLG C AP +NDD E +L+ E + I+++L ++E
Sbjct: 112 GSITVLPSICLGLCDRAPAALINDDRVEGELTPERMRMILTELAEEE 158
>UniRef50_A0QNT7 Cluster: Formate dehydrogenase, gamma subunit; n=1;
Mycobacterium smegmatis str. MC2 155|Rep: Formate
dehydrogenase, gamma subunit - Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155)
Length = 161
Score = 50.4 bits (115), Expect = 6e-05
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
R RG ++P+L Q + G +P A+ +AE LNL + V+ V TFY F P G+
Sbjct: 23 RDHRGPLLPILHAVQERLG-CVPAEAVPVLAEELNLSRADVHGVITFYHDFRSEPAGRTT 81
Query: 428 VQVCTTTPCWLRGSDAILNAIKQETNCRL 514
V+VC C G+ ++ ++ +L
Sbjct: 82 VRVCRAEACQALGASRLVAHLQDRHGVQL 110
>UniRef50_Q835I9 Cluster: NAD-dependent formate dehydrogenase, gamma
subunit, putative; n=1; Enterococcus faecalis|Rep:
NAD-dependent formate dehydrogenase, gamma subunit,
putative - Enterococcus faecalis (Streptococcus
faecalis)
Length = 162
Score = 50.0 bits (114), Expect = 7e-05
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 275 LLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPC 454
L++L G++ VAE L+L + RVYE+ +FY + P KY +++C +TPC
Sbjct: 27 LIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQAKYVLKICNSTPC 86
Query: 455 WLRGSDAILNAIK 493
G + ++
Sbjct: 87 HYTGGAMVAEVLE 99
Score = 37.5 bits (83), Expect = 0.43
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 523 SPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKD 666
+P G F + C+GAC P+I++ D + L+ E ++I L+ D
Sbjct: 110 TPDGLFMYHSIPCIGACDLGPVIKIKDTVFSQLTEEKIYQLIQHLQND 157
>UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 627
Score = 49.6 bits (113), Expect = 1e-04
Identities = 24/87 (27%), Positives = 42/87 (48%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A++PLL + ++ + + +++++ L + + TFY F+ P GK V+VC
Sbjct: 29 AVLPLLHYYMEKKN-YISEADVSRISQLTGLSVSDILGIGTFYQHFVFHPTGKNSVRVCL 87
Query: 443 TTPCWLRGSDAILNAIKQETNCRLEAT 523
TTPC RG + + LE T
Sbjct: 88 TTPCLFRGGKKTFETLSKSLGIGLEET 114
Score = 39.9 bits (89), Expect = 0.080
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 523 SPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKK 663
+P G F++ +CLG C AP +NDD Y + E I+ + +K
Sbjct: 115 TPDGLFTLYPAQCLGQCSEAPSFSINDDVYVGIPPEKIPSILDEYRK 161
>UniRef50_A1FMP2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=5; Pseudomonas|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Pseudomonas putida W619
Length = 160
Score = 49.6 bits (113), Expect = 1e-04
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
GA++P+L Q +S G++P +A+ +A LNL V V +FY F P ++ +++C
Sbjct: 23 GALLPILHAVQ-ESIGFIPDAAVADIAHALNLSLAEVRGVISFYHDFRTAPPARHTLRLC 81
Query: 440 TTTPCWLRGSDAILNAIKQE 499
C RGS+A+ ++++
Sbjct: 82 RAESCQSRGSEALAAQLREQ 101
>UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreductase;
n=2; Streptomyces|Rep: Putative respiratory chain
oxidoreductase - Streptomyces coelicolor
Length = 646
Score = 49.2 bits (112), Expect = 1e-04
Identities = 32/99 (32%), Positives = 45/99 (45%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
R +R ++P L A GW+ A+ V L +P Y VATFY MF RP
Sbjct: 32 RDRRDQLLPALH-ALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPATV 90
Query: 428 VQVCTTTPCWLRGSDAILNAIKQETNCRLEATVLVESFP 544
+ VCT C G+ + A+ E+ E+ V +E P
Sbjct: 91 LHVCTDLACTAAGASRLCAAV--ESRLGPESGVKLERSP 127
>UniRef50_Q74GA4 Cluster: NADH dehydrogenase I, E subunit; n=6;
Geobacter|Rep: NADH dehydrogenase I, E subunit -
Geobacter sulfurreducens
Length = 173
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/75 (32%), Positives = 45/75 (60%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
G ++P+L Q + G ++P + VAE LN+ +++ V TFY F +P G++ ++VC
Sbjct: 36 GNLMPVLQGIQDEYG-YVPRPTIDLVAERLNVYPSQIFGVLTFYAQFHLKPRGRFIIRVC 94
Query: 440 TTTPCWLRGSDAILN 484
T C ++G+ I++
Sbjct: 95 VGTACHVQGAPRIVD 109
Score = 41.5 bits (93), Expect = 0.026
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +1
Query: 523 SPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISK 654
+P +++ +V CLGAC AP+ VNDD + ++V+ +EII++
Sbjct: 123 TPDLRYTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVEEIIAE 166
>UniRef50_A1AP34 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit precursor; n=2; Bacteria|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit precursor - Pelobacter
propionicus (strain DSM 2379)
Length = 169
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A + L+ A + +LP+ + V E L++P +V+ V +FY F P GKY +++C
Sbjct: 30 ARLTLILQAIQDEYRYLPMEVLSHVIEELDIPATKVFGVVSFYAHFTLEPRGKYVIRLCD 89
Query: 443 TTPCWLRGSDAILNAI 490
T C + S IL A+
Sbjct: 90 GTACHAKRSIPILEAL 105
>UniRef50_Q47WZ1 Cluster: Formate dehydrogenase, gamma subunit; n=1;
Colwellia psychrerythraea 34H|Rep: Formate
dehydrogenase, gamma subunit - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 163
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
GAM+P+L Q ++P +A+ +A+ LN+ K V+ V +FY F G + +++C
Sbjct: 24 GAMLPILHAIQNDLS-FIPSNALPLIAKALNVSKAEVHGVISFYHHFRTEEPGAHVIEIC 82
Query: 440 TTTPCWLRGSDAILNAIKQ 496
C GS A+ IKQ
Sbjct: 83 RGESCQAMGSRALEENIKQ 101
Score = 34.3 bits (75), Expect = 4.0
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +1
Query: 535 KFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 657
++++ V CLG C +P +++ DD + +L ++ ++II+ L
Sbjct: 115 QYTLEPVYCLGNCACSPAMRIGDDIHGELDLQKFEQIIASL 155
>UniRef50_A3DCI7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=5; Clostridium|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Clostridium thermocellum
(strain ATCC 27405 / DSM 1237)
Length = 165
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/79 (31%), Positives = 44/79 (55%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A+I +L Q + ++P +++ L + + R++ VATFY F P GKY ++VC
Sbjct: 27 AIIAILQSIQEEYH-YIPKEVFPYLSKKLKVSEARIFSVATFYENFSLEPKGKYIIKVCD 85
Query: 443 TTPCWLRGSDAILNAIKQE 499
T C +R S I+ +++E
Sbjct: 86 GTACHVRKSIPIIERLRKE 104
Score = 44.0 bits (99), Expect = 0.005
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDE 669
F+V V CLGAC AP+I VND Y +++ + E+I +L++ +
Sbjct: 119 FTVETVSCLGACGLAPVITVNDKVYAEMTPDKASELIKQLREGD 162
>UniRef50_A3YBB2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Marinomonas sp. MED121|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit - Marinomonas
sp. MED121
Length = 189
Score = 47.6 bits (108), Expect = 4e-04
Identities = 22/69 (31%), Positives = 39/69 (56%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
G ++P+L Q Q G ++P S++ + + LN+ + V+ V TFY F +P G++ ++VC
Sbjct: 43 GPLLPILHEVQHQLG-YVPDSSLPIIGKALNISRAEVHGVVTFYHHFSSKPRGRHIIEVC 101
Query: 440 TTTPCWLRG 466
C G
Sbjct: 102 RAESCQSMG 110
Score = 34.3 bits (75), Expect = 4.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 535 KFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 660
+ ++ V CLG C +P I+V D+ Y + E EI+ +L+
Sbjct: 134 EITLEPVFCLGNCACSPAIRVGDEVYGRMDAEQFDEIVDELR 175
>UniRef50_Q608U6 Cluster: Formate dehydrogenase, gamma subunit; n=3;
Proteobacteria|Rep: Formate dehydrogenase, gamma subunit
- Methylococcus capsulatus
Length = 159
Score = 47.2 bits (107), Expect = 5e-04
Identities = 24/82 (29%), Positives = 45/82 (54%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
+S GA++P+L Q + G ++P A+ ++A+ LNL + V+ V +FY F GK+
Sbjct: 19 KSMPGALLPILHGIQDRIG-FIPEDAVPQIAKALNLSRAEVHGVISFYHYFRTTAPGKHT 77
Query: 428 VQVCTTTPCWLRGSDAILNAIK 493
+ +C C S+++ +K
Sbjct: 78 IHLCRAESCQAMNSESLETHVK 99
>UniRef50_A5V6C3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=2; Sphingomonadaceae|Rep: NADH dehydrogenase
(Ubiquinone), 24 kDa subunit - Sphingomonas wittichii
RW1
Length = 159
Score = 47.2 bits (107), Expect = 5e-04
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = +2
Query: 254 QRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQ 433
+RGA++PLL Q + G ++ + VA +NL + V+ V +FY F + P G++ V+
Sbjct: 23 RRGALLPLLHDLQEELG-FVGEETVAAVAAAMNLSRAEVHGVVSFYHDFRKAPAGRHVVK 81
Query: 434 VCTTTPCWLRGSDAILNAI 490
C C RG AI A+
Sbjct: 82 YCRAESCRSRGGVAIEAAL 100
>UniRef50_Q28P85 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa
subunit; n=1; Jannaschia sp. CCS1|Rep: NADH
dehydrogenase (Ubiquinone) 24 kDa subunit - Jannaschia
sp. (strain CCS1)
Length = 167
Score = 46.8 bits (106), Expect = 7e-04
Identities = 23/77 (29%), Positives = 44/77 (57%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
G ++P+L Q + G++P A +A LN+ + ++ V +FY F R+P GK +++C
Sbjct: 29 GPLLPILHDVQA-AFGYVPDDARALIATALNITEAELHGVISFYHDFRRKPAGKRVLKIC 87
Query: 440 TTTPCWLRGSDAILNAI 490
C G++A+ +A+
Sbjct: 88 RAEACQAMGANAMSDAV 104
>UniRef50_A3Z0U6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Synechococcus sp. WH 5701|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit -
Synechococcus sp. WH 5701
Length = 168
Score = 46.8 bits (106), Expect = 7e-04
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A+I +L AQ+ +L + VA L LP RV A+FY +F +P ++ VCT
Sbjct: 36 ALIEVLHGAQKLYS-YLSDDLLRHVATRLQLPLSRVKGTASFYHLFRFQPPARHRCVVCT 94
Query: 443 TTPCWLRGSDAILNAIKQETNCRLEA 520
T C ++G+ A++ A+++ +L A
Sbjct: 95 GTACQIQGAPALIAAMEEGLGLKLGA 120
>UniRef50_UPI0000E87F9D Cluster: ATP synthase subunit E; n=1;
Methylophilales bacterium HTCC2181|Rep: ATP synthase
subunit E - Methylophilales bacterium HTCC2181
Length = 157
Score = 46.4 bits (105), Expect = 0.001
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
GA++PL+ Q S G++P + ++ NL ++ TFY F P GK +QVC
Sbjct: 23 GALLPLMHAIQ-DSLGYIPEDSYPIISSAYNLSIAEIHGFVTFYHHFRTSPSGKNILQVC 81
Query: 440 TTTPCWLRGSDAILNAIKQ 496
C GS++I N K+
Sbjct: 82 RAESCQSMGSESIENYCKK 100
>UniRef50_Q483I3 Cluster: Formate dehydrogenase, gamma subunit; n=1;
Colwellia psychrerythraea 34H|Rep: Formate
dehydrogenase, gamma subunit - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 168
Score = 46.4 bits (105), Expect = 0.001
Identities = 27/97 (27%), Positives = 47/97 (48%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
GA++P+L Q ++P A+ VA+ L + +Y V TFY F G++ +++C
Sbjct: 26 GALLPILHDIQHHFD-YIPKKAIAIVAQGLQQTEAEIYGVITFYAHFQLNKPGRHIIEIC 84
Query: 440 TTTPCWLRGSDAILNAIKQETNCRLEATVLVESFPFQ 550
C GS A+ AIK + T + ++F +
Sbjct: 85 RGEACQAMGSKALEKAIKSQLAVDFGQTTVDKNFTLE 121
>UniRef50_Q057X2 Cluster: NADH dehydrogenase I chain E; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep: NADH
dehydrogenase I chain E - Buchnera aphidicola subsp.
Cinara cedri
Length = 156
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/85 (24%), Positives = 43/85 (50%)
Frame = +2
Query: 251 SQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHV 430
+ + A I L + Q W+ ++ +++IL++P V +ATFY R+P+G+ +
Sbjct: 21 NSQAACIEALKIVQEHRK-WICKDSIIAISKILSIPACEVESIATFYCHIFRKPVGRNII 79
Query: 431 QVCTTTPCWLRGSDAILNAIKQETN 505
+ C + C++ +I +K N
Sbjct: 80 RYCDSVVCFINNFKSIKKKLKYILN 104
>UniRef50_A3JB74 Cluster: ATP synthase subunit E; n=1; Marinobacter
sp. ELB17|Rep: ATP synthase subunit E - Marinobacter sp.
ELB17
Length = 178
Score = 44.8 bits (101), Expect = 0.003
Identities = 25/94 (26%), Positives = 45/94 (47%)
Frame = +2
Query: 260 GAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVC 439
GA++P+L Q + G ++P A+ +AE+L + ++ V +FY F P G ++VC
Sbjct: 39 GALLPILHAIQDRVG-YVPEDAVPIIAEMLQQTRADIHGVISFYHHFRTHPSGSNLLEVC 97
Query: 440 TTTPCWLRGSDAILNAIKQETNCRLEATVLVESF 541
C RG A+ +++ + T F
Sbjct: 98 RAEACQARGGRALERHVQERLSVGYHDTTADNEF 131
>UniRef50_A0RMD2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kDa
subunit; n=1; Campylobacter fetus subsp. fetus
82-40|Rep: Hydrogenosomal NADH dehydrogenase 24 kDa
subunit - Campylobacter fetus subsp. fetus (strain
82-40)
Length = 163
Score = 44.0 bits (99), Expect = 0.005
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
R ++P L + QR G ++ + + + L + M E FY+MF ++ GK+ ++
Sbjct: 24 RALVLPSLWMVQRAQG-FIDAKDVLYLEKTLGIRSMFYAEAIGFYSMFNQKSKGKFELKF 82
Query: 437 CTTTPCWLRGSDAIL 481
C T C LRGSD ++
Sbjct: 83 CKTITCKLRGSDELI 97
Score = 39.5 bits (88), Expect = 0.11
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKD 666
+G S G FS+ E ECLG C AP + N + + L +I K++K+
Sbjct: 108 MGETSSDGLFSLGETECLGYCEKAPCMLCNLEQIDSLDENSITNLIEKIRKE 159
>UniRef50_Q63RZ3 Cluster: NAD-dependent formate dehydrogenase gamma
subunit; n=28; Burkholderia|Rep: NAD-dependent formate
dehydrogenase gamma subunit - Burkholderia pseudomallei
(Pseudomonas pseudomallei)
Length = 171
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/89 (23%), Positives = 43/89 (48%)
Frame = +2
Query: 251 SQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHV 430
+Q G + + A + G++P + + +A+ LNL + V+ V T+Y F P +
Sbjct: 30 AQPGRSLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPPAHVTI 89
Query: 431 QVCTTTPCWLRGSDAILNAIKQETNCRLE 517
++C C G +A++ + CR++
Sbjct: 90 RLCRAEACRSMGGEALVAHAQARAGCRID 118
>UniRef50_Q0AL75 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Maricaulis maris MCS10|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit - Maricaulis
maris (strain MCS10)
Length = 163
Score = 43.6 bits (98), Expect = 0.006
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +2
Query: 263 AMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCT 442
A+I +L Q S G + +A+ +A+ LNL + V V +FY F R+P ++ ++C
Sbjct: 26 ALIEVLHWLQA-SAGHISDAAIATIADALNLSRAEVLGVVSFYHDFRRQPGARHTFKLCR 84
Query: 443 TTPCWLRGSDAILNAIKQE 499
C G++A+ AI+ +
Sbjct: 85 AEACQAAGAEAVAAAIEDQ 103
>UniRef50_A6PMG8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit precursor; n=1; Victivallis vadensis ATCC
BAA-548|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit precursor - Victivallis vadensis ATCC BAA-548
Length = 150
Score = 43.2 bits (97), Expect = 0.009
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +2
Query: 305 GWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAI 478
G++ ++ ++E +P++ V V +FY F R GKY + +C T C ++GS +
Sbjct: 30 GYVSDESIRAISEYFGIPEVEVEGVLSFYAQFKRVKPGKYKIAICDGTACHIKGSPLV 87
Score = 34.7 bits (76), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 532 GKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISK 654
G FS+ V CLG C AP++ VN Y L + T +I+ +
Sbjct: 106 GHFSLETVACLGCCSLAPVMSVNGRVYGKLDRKSTIKILKE 146
>UniRef50_Q2S5I9 Cluster: NADH-ubiquinone oxidoreductase 24 kDa
subunit, putative; n=2; Sphingobacteriales genera
incertae sedis|Rep: NADH-ubiquinone oxidoreductase 24
kDa subunit, putative - Salinibacter ruber (strain DSM
13855)
Length = 249
Score = 42.7 bits (96), Expect = 0.011
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 514 GGNSPCGKFSVSEVECLGACVNAPMIQV-NDDYYEDLSVEDTKEIISKLKKDEKP 675
G + G F++ E ECLG+C +APM+++ N Y +L+ + +++ L+ E P
Sbjct: 157 GETTDDGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGEVP 211
Score = 41.9 bits (94), Expect = 0.020
Identities = 23/81 (28%), Positives = 44/81 (54%)
Frame = +2
Query: 257 RGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQV 436
+ A++ +L LAQ + G +L + A+ L++ + Y VATFY + + G Y + V
Sbjct: 72 QAAIMKVLWLAQEKFG-YLAPEVIQLCADTLDMTFTQAYGVATFYHQYFKEEKGTYVLDV 130
Query: 437 CTTTPCWLRGSDAILNAIKQE 499
CT C + G +L+ ++++
Sbjct: 131 CTCFTCQVCGGYDVLHYLEEK 151
>UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=1;
Psychroflexus torquis ATCC 700755|Rep: Formate
dehydrogenase, beta subunit - Psychroflexus torquis ATCC
700755
Length = 243
Score = 41.1 bits (92), Expect = 0.035
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = +2
Query: 239 LP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFI----- 403
LP QR +I L L Q + L + +A ++NLP ++EVA+FY F
Sbjct: 36 LPEILQRDMLIEYLHLIQDKVSH-LSSDNLSALAFLMNLPLSEIWEVASFYDHFTLVKDS 94
Query: 404 RRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCRL 514
+ P +++CT+ C L S+ IL I N ++
Sbjct: 95 QNPPPTRTIRICTSVTCSLFNSEKILETIAPNDNTKI 131
>UniRef50_A4XP94 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit; n=1; Pseudomonas mendocina ymp|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa subunit - Pseudomonas
mendocina ymp
Length = 164
Score = 41.1 bits (92), Expect = 0.035
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
R Q GA++P+L Q + G +P + +AE L L + V+ V +FY F P G+
Sbjct: 25 RGQPGALLPILHDIQDRLGA-VPPELLPLIAEDLCLSRAEVHGVVSFYHDFRATPPGRQV 83
Query: 428 VQVCTTTPCWLRGSDAILNAIKQETNCRLEAT 523
+++C C G A+ ++ + L T
Sbjct: 84 LKLCQAEACQSMGVKALTAELESKLGLPLGET 115
>UniRef50_A6VXL9 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa
subunit; n=3; Gammaproteobacteria|Rep: NADH
dehydrogenase (Ubiquinone) 24 kDa subunit - Marinomonas
sp. MWYL1
Length = 165
Score = 40.3 bits (90), Expect = 0.060
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +2
Query: 248 RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 427
+++ GA++PLL Q + ++P A+ +A L L + V+ V +FY F + G++
Sbjct: 22 KAKPGALLPLLHAIQDRFS-YIPEDAVALIAGALKLSRAEVHGVISFYHHFRTKQPGRHV 80
Query: 428 VQVCTTTPCWLRGS 469
V+VC C G+
Sbjct: 81 VEVCRAEACQAVGA 94
>UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=2; Proteobacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Stappia aggregata IAM 12614
Length = 626
Score = 36.7 bits (81), Expect = 0.74
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +1
Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPK 678
VG S G FS+ C+G C AP VND L+ E + LK P+
Sbjct: 121 VGETSNDGAFSLEYTPCIGMCDQAPAAMVNDIVLTKLTPETARSAAQALKAGRSPE 176
>UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=1; Dechloromonas aromatica RCB|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit - Dechloromonas aromatica (strain RCB)
Length = 632
Score = 36.3 bits (80), Expect = 0.98
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 308 WLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNA 487
W+ A+ ++ L +P+ ++ VA FY F P GKY V + GS A+++
Sbjct: 42 WISPEAIDRMQVTLGVPRTKIEGVAGFYAFFYTEPRGKYRVLFSDNITDRMLGSKAMMDR 101
Query: 488 I 490
+
Sbjct: 102 L 102
>UniRef50_Q2Z141 Cluster: Putative ATP-dependent DNA helicase; n=1;
Pseudomonas phage EL|Rep: Putative ATP-dependent DNA
helicase - Pseudomonas phage EL
Length = 760
Score = 36.3 bits (80), Expect = 0.98
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 96 ISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQ---ANQKRVEXLLAIYPE 248
+++RS+QT +++ D +F+ PED P PF Q + Q+R+E L + E
Sbjct: 223 VNTRSVQTLLAKEPDGVFIPLCEPEDGPEKPFVTDQLEGSRQQRLEHLRRLMDE 276
>UniRef50_A7PC77 Cluster: Chromosome chr2 scaffold_11, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_11, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 65
Score = 35.5 bits (78), Expect = 1.7
Identities = 21/56 (37%), Positives = 37/56 (66%)
Frame = +3
Query: 54 MLSSLRTGVQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRV 221
ML+ L T + ++R ++ QT+ S +L H D+ ++NPSIP+EF+ AN+++V
Sbjct: 1 MLARLATEARQIFR---QNPQTSRSFS-TALNYHLDSLDNNPSIPWEFNDANKEKV 52
>UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;
n=6; Proteobacteria|Rep: NADH dehydrogenase (Quinone)
precursor - Acidovorax sp. (strain JS42)
Length = 640
Score = 35.1 bits (77), Expect = 2.3
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +2
Query: 335 VAEILNLPKMRVYEVATFYTMF--IR---RPIGKYHVQVCTTTPCWLRGSDAILNAIKQE 499
+A +NLP +VYEVA+FY F +R + V+VC + C + G+ +L A+
Sbjct: 84 LARQMNLPMAQVYEVASFYHHFEIVRGHDAQAPRLVVRVCDSLSCTMAGARELLEALPAR 143
Query: 500 TNCRLEATVLVESFP 544
+ V V + P
Sbjct: 144 LQAAGQGDVQVVAVP 158
>UniRef50_A5ALP4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 100
Score = 34.7 bits (76), Expect = 3.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 607 YYEDLSVEDTKEIISKLKKDEKPKPGPR 690
Y +SVE+ KE + K K DEKPKP P+
Sbjct: 45 YATXVSVEEVKEKVDKGKGDEKPKPDPK 72
>UniRef50_UPI0000E4767A Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 417
Score = 34.3 bits (75), Expect = 4.0
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 631 DTKEIISKLK-KDEKPKPGPRSGRFASEPLGGLTSLTEEPTGPGFEYKTHSRRKSGVVLC 807
D KE K DE K + AS PLGGLT +T+E E +S G L
Sbjct: 76 DNKETADNTKVNDETEKAANSENKEASAPLGGLTKMTKEEAAEAAEAALNSAYNFGSFLF 135
Query: 808 K 810
K
Sbjct: 136 K 136
>UniRef50_UPI00003C0AF2 Cluster: PREDICTED: similar to Bone
morphogenetic protein 10 precursor (BMP-10); n=1; Apis
mellifera|Rep: PREDICTED: similar to Bone morphogenetic
protein 10 precursor (BMP-10) - Apis mellifera
Length = 339
Score = 34.3 bits (75), Expect = 4.0
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 78 VQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKR 218
V GLW+ SSRS QT S+ P +PS+ FS KR
Sbjct: 17 VYGLWKTSSRSWQTPRVHAKASIQFDLSIPASSPSVLHRFSNRTSKR 63
>UniRef50_Q0LHA0 Cluster: Peptidase S9, prolyl oligopeptidase active
site region; n=1; Herpetosiphon aurantiacus ATCC
23779|Rep: Peptidase S9, prolyl oligopeptidase active
site region - Herpetosiphon aurantiacus ATCC 23779
Length = 682
Score = 34.3 bits (75), Expect = 4.0
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +3
Query: 84 GLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKR 218
G++ +++R+ +T A R D +H TPEDNPSI +SQ+ KR
Sbjct: 320 GIYCLATRAARTRAYRYSDGA-MHELTPEDNPSIS-GYSQSLNKR 362
>UniRef50_A6F4P8 Cluster: Putative uncharacterized protein; n=1;
Marinobacter algicola DG893|Rep: Putative
uncharacterized protein - Marinobacter algicola DG893
Length = 1036
Score = 33.9 bits (74), Expect = 5.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 99 SSRSIQTTASRQHDSLFVHRDTPEDNPSIP 188
S+ SI + ASR H +LFV+RD PE +P
Sbjct: 389 STESITSGASRDHKTLFVYRDAPEKLVRVP 418
>UniRef50_A6ET12 Cluster: Peptidase S41; n=1; unidentified
eubacterium SCB49|Rep: Peptidase S41 - unidentified
eubacterium SCB49
Length = 543
Score = 33.9 bits (74), Expect = 5.3
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Frame = +1
Query: 544 VSEVECLGACVNAPMIQVNDDYYE---DLS-VEDT----KEIISKLKKDEKPKPGPRSGR 699
++ +E LG N ++Y++ DLS +DT E+ SKLK EK + +
Sbjct: 79 INWIESLGKIENCKKCNSEEEYFDKNFDLSWTQDTTLFSNELSSKLKFIEKNRNQRENFY 138
Query: 700 FASEPLGGLTSLTEEPTGPGFEYKTHSRRKSGV 798
+EP+G + + EPT FE+ R G+
Sbjct: 139 VTTEPIGNI-KIINEPTYKDFEFPKEEYRLLGL 170
>UniRef50_UPI0000DB7708 Cluster: PREDICTED: similar to
Calmodulin-binding transcription activator CG8809-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
Calmodulin-binding transcription activator CG8809-PA -
Apis mellifera
Length = 971
Score = 33.5 bits (73), Expect = 6.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 616 DLSVEDTKEIISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEEPT 750
D+S+ + I+ D KP G S +FA++P +S TE+PT
Sbjct: 216 DISLTGSSRILETFPHDSKPTTGSFSFKFATDPRWWRSSDTEQPT 260
>UniRef50_Q8IS76 Cluster: Putative uncharacterized protein; n=1;
Euprymna scolopes|Rep: Putative uncharacterized protein
- Euprymna scolopes
Length = 102
Score = 33.5 bits (73), Expect = 6.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 216 SFDWPARTQRECSDCPQECLGGQIDCHVALML 121
+F P +T + C DCP C G DC L L
Sbjct: 4 AFKTPYKTGKPCGDCPDTCANGLCDCKGKLCL 35
>UniRef50_UPI0000E21DF9 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 267
Score = 33.1 bits (72), Expect = 9.2
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -1
Query: 303 PLCRCARSSKGIMAPRCDLQGKWPTKXLLSFDWPARTQRECSDCPQECLGG 151
P+C CA S G QG+WP + WPAR C P + GG
Sbjct: 211 PVCACAASRAGSPRGAAYSQGQWPER------WPARVPPRCE--PSDSAGG 253
>UniRef50_UPI0000D5799D Cluster: PREDICTED: similar to CG3696-PA,
isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG3696-PA, isoform A - Tribolium castaneum
Length = 4009
Score = 33.1 bits (72), Expect = 9.2
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 598 NDDYYEDLSVEDTKEIISKLKKD-EKPKPGPRSGRFASEPLGGLTSLTEEPTGPGF-EYK 771
+DD E+LS++ IS++ + +P PGP + P G L ++PT P +
Sbjct: 2473 DDDTTEELSLKSKNRDISEVNSEGAEPSPGPSASSETQPPDGDGDDLDDKPTWPTITDLN 2532
Query: 772 THSRR 786
T RR
Sbjct: 2533 TRLRR 2537
>UniRef50_A7CJ39 Cluster: Putative uncharacterized protein; n=1;
Ralstonia pickettii 12D|Rep: Putative uncharacterized
protein - Ralstonia pickettii 12D
Length = 190
Score = 33.1 bits (72), Expect = 9.2
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 649 SKLKKDEKPKPGPRSGRFASEPLGGLTSLTEEPTGPGFEYKTHSRR--KSGVVL 804
SKL K PR+ R ++PL G T T P F H RR KSG +L
Sbjct: 71 SKLAKGRSTPAAPRATRPRTDPLLGPAGRTSRATTPSFLQAHHHRRQGKSGTLL 124
>UniRef50_A2DWG3 Cluster: Legume-like lectin family protein; n=2;
Trichomonas vaginalis G3|Rep: Legume-like lectin family
protein - Trichomonas vaginalis G3
Length = 432
Score = 33.1 bits (72), Expect = 9.2
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +3
Query: 102 SRSIQTTASR--QHD--SLFVHRDTPEDNPSIPFEFSQANQKRVEXLLAI 239
S S QT+A R QHD S+ VH + D+P+ F++S N+K +E ++ I
Sbjct: 195 SFSAQTSAVRSMQHDLLSMRVHSMSDCDHPNATFDYSSKNKKYIEDMVEI 244
>UniRef50_Q4WTX7 Cluster: C6 finger domain protein, putative; n=1;
Aspergillus fumigatus|Rep: C6 finger domain protein,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 696
Score = 33.1 bits (72), Expect = 9.2
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 673 PKPGPRSGRFASEPLGGLTSLTEEPTGPGFEYKTHSRRKSGVVLC 807
P PG RS RF EP + + EEP PG + +RR+ G ++C
Sbjct: 324 PLPGTRSSRF--EPPEWMGVIHEEP--PGLRFFNEARRRIGFLMC 364
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 878,315,721
Number of Sequences: 1657284
Number of extensions: 18211900
Number of successful extensions: 49409
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 47152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49366
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75423184424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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