Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30533
         (855 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    25   1.0  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    25   1.0  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   1.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   4.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   5.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.4  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
 Frame = +1

Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTK--EIISKLKKD-----------EKPK 678
           F + + +  G C +   +   +DYY DL ++  +  E+++ L+              KP+
Sbjct: 200 FKIGDADGTGNCEDPEDVPGCEDYYGDLDLKSIRKSELLAGLQSSGSSRSHQPATKSKPR 259

Query: 679 PGPRSGRFASEP 714
           P P S R A EP
Sbjct: 260 PAPAS-RNAPEP 270


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 642 FFCIFYRQVLIVIIIDLY 589
           FFC+FY+  LI +I  L+
Sbjct: 95  FFCLFYQNKLIEVISKLH 112


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +1

Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEI 645
           F + + +  G C +   +   +DYY+D+ ++  K++
Sbjct: 200 FKIGDADGTGNCEDPEDVPGCEDYYKDVDLKALKKL 235


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 794 PDLRLECVLYSKPGPVGSSVSEVNPP 717
           PD   +   YS PGP  S+ S V  P
Sbjct: 288 PDHIQQATPYSAPGPTYSTWSTVQTP 313


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 664 DEKPKPGPRSGRFASEPLGGLTSLTEEPTGPGFEYKTHSRRK 789
           D++  P PR     +E     T     PT P ++ KT + ++
Sbjct: 415 DQRSTPSPRVYGNVNENQDCSTPTENSPTKPYYKLKTANNKR 456


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 268 HGTSL*PSG*MANKXST 218
           HG+ L PSG   NK ST
Sbjct: 54  HGSLLSPSGNTPNKSST 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,809
Number of Sequences: 336
Number of extensions: 4718
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)