Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30533
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    53   6e-08
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   7.8  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +2

Query: 218 SRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY-T 394
           ++  +   P R Q  A++PLLDLAQRQ G W+P +AM+++A +  +    V+ +   Y  
Sbjct: 15  AKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVHSLILAYPN 74

Query: 395 MFIRRPIGKYHVQVCTTTPC 454
            F  RP  K  V++C +  C
Sbjct: 75  DFFWRP-KKPRVRICNSWMC 93



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 538 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 657
           F V    CLG C   P + +ND  Y   + E   +I+  L
Sbjct: 118 FDVENTGCLGNCFQGPAMWINDKIYGVNTKEKLVDIMEAL 157


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 449 PCWLRGSDAILNAIKQETNCRLE 517
           PCWL+      +A+K  + CR+E
Sbjct: 477 PCWLKIQQPNFDAVKNASWCRVE 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,651,125
Number of Sequences: 5004
Number of extensions: 77684
Number of successful extensions: 200
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)