Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30533
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02580.1 68417.m00352 NADH-ubiquinone oxidoreductase 24 kDa s...   112   3e-25
At4g19700.1 68417.m02893 expressed protein                             31   0.98 
At3g59180.1 68416.m06598 hypothetical protein contains a novel d...    30   1.7  
At5g28480.1 68418.m03462 hypothetical protein                          29   3.0  
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P...    29   3.0  
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to...    29   3.0  
At1g01900.1 68414.m00107 subtilase family protein contains simil...    29   3.0  
At3g22550.1 68416.m02849 senescence-associated protein-related s...    29   3.9  
At3g02860.2 68416.m00279 expressed protein                             29   3.9  
At3g02860.1 68416.m00278 expressed protein                             29   3.9  
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami...    28   6.9  
At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger) fa...    28   6.9  
At5g02170.1 68418.m00138 amino acid transporter family protein b...    28   9.1  
At3g29230.1 68416.m03667 pentatricopeptide (PPR) repeat-containi...    28   9.1  

>At4g02580.1 68417.m00352 NADH-ubiquinone oxidoreductase 24 kDa
           subunit, putative similar to NADH-ubiquinone
           oxidoreductase 24 kDa subunit, mitochondrial precursor
           (EC 1.6.5.3) (EC 1.6.99.3) (Polypeptide II)
           (Swiss-Prot:P04394) [Bos taurus]
          Length = 255

 Score =  112 bits (269), Expect = 3e-25
 Identities = 52/97 (53%), Positives = 73/97 (75%)
 Frame = +2

Query: 200 AGQSKESRXFVGHLP*RSQRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEV 379
           A QSK  +  + + P   ++ A+IPLLDLAQ+Q+GGWLP+SAM+ VA+++ +  +RVYEV
Sbjct: 52  ANQSKV-KEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEV 110

Query: 380 ATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAI 490
           ATFY+MF R  +GKYH+ VC TTPC +RGS  I +A+
Sbjct: 111 ATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRDIESAL 147



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
 Frame = +1

Query: 532 GKFSVSEVECLGACVNAPMIQVND----------DYYEDLSVEDTKEIISKLKKDEKPKP 681
           G FSV E+EC+G CVNAPMI V D          +Y+ED++ E   EI+ KL+K EKP  
Sbjct: 162 GLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPH 221

Query: 682 GPRS-GRFASEPLGGLTSLTEEPTGPGF 762
           G ++  R    P GG  +L  EP  P F
Sbjct: 222 GTQNPKRIKCGPEGGNKTLLGEPKPPQF 249



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 16/40 (40%), Positives = 29/40 (72%)
 Frame = +3

Query: 141 SLFVHRDTPEDNPSIPFEFSQANQKRVEXLLAIYPEGHSE 260
           +L  H D+P++ P +P+EFS+ANQ +V+ +L+ YP  + +
Sbjct: 31  ALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQ 70


>At4g19700.1 68417.m02893 expressed protein
          Length = 304

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = +3

Query: 120 TASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEXLLAIYPEGHSEVP*FLYWIWHNDR 299
           +  RQ D  F   + P    S+ F+ S  +   VE +  I  +  SE+  F+       R
Sbjct: 76  STKRQRDFQFSDSNAPVKRRSVAFDSSSPSLINVELVSQIQNQQQSEIDRFVAQQTEKLR 135

Query: 300 VEAGYRSQLCTRWLRS 347
           +E   R Q  TR L S
Sbjct: 136 IEIEARQQTQTRMLAS 151


>At3g59180.1 68416.m06598 hypothetical protein contains a novel
           domain with similarity to F-box domain;
          Length = 475

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 517 GNSPCGKFSVS-EVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKD 666
           GN+P  +FS+  +V C  ACV+  +I V D    DL +  + E   KL  +
Sbjct: 50  GNAPLNRFSLKCKVRCDSACVDGWIINVLDRGVLDLDLNISSESDYKLPSE 100


>At5g28480.1 68418.m03462 hypothetical protein
          Length = 1230

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 592 QVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRSGRFASEP 714
           Q+ D  +EDL V   +EI + L+  ++ + GPRS   +  P
Sbjct: 494 QLLDKKFEDLKVFVREEIRAALQSQDRKEEGPRSSHKSDSP 534


>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At5g28270, At2g05450,
           At1g45090, At2g16180, At2g06750
          Length = 1224

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 592 QVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRSGRFASEP 714
           Q+ D  +EDL V   +EI + L+  ++ + GPRS   +  P
Sbjct: 507 QLLDKKFEDLKVFVREEIRAALQSQDRKEEGPRSSHKSDSP 547


>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
           At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1210

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 592 QVNDDYYEDLSVEDTKEIISKLKKDEKPKPGPRSGRFASEP 714
           Q+ D  +EDL V   +EI + L+  ++ + GPRS   +  P
Sbjct: 498 QLLDKKFEDLKVFVREEIRAALQSQDRKEEGPRSSHKSDSP 538


>At1g01900.1 68414.m00107 subtilase family protein contains
           similarity to cucumisin-like serine protease GB:AAC18851
           GI:3176874 from [Arabidopsis thaliana]
          Length = 774

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -1

Query: 681 RFRFLILL*FADNFFCIFYRQVLIVIIIDLYHWGVHTSSQTFNL*NGKLSTRTVASNL 508
           RF  ++L  F+DN   +F+R  ++   +  +   V +  QT+ +     ST+ + ++L
Sbjct: 3   RFLLMLLFPFSDNRPMMFFRSFIVFFFLIFFASNVSSRKQTYVIHTVTTSTKHIVTSL 60


>At3g22550.1 68416.m02849 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 267

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 643 IISKLKKDEKPKPGPRSG 696
           I+  L +DE P+PGPRSG
Sbjct: 93  IVDSLIQDETPEPGPRSG 110


>At3g02860.2 68416.m00279 expressed protein
          Length = 313

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY--YEDLSVEDTKEIISKLKKDE 669
           V GN P G F   E + L   +      + D+Y  +E L  +D + + S+++++E
Sbjct: 182 VNGNLPTGFFDNKEADLLAHGIKLVKPDIKDEYKEFEKLIQDDLQVVDSRMEEEE 236


>At3g02860.1 68416.m00278 expressed protein
          Length = 312

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 511 VGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY--YEDLSVEDTKEIISKLKKDE 669
           V GN P G F   E + L   +      + D+Y  +E L  +D + + S+++++E
Sbjct: 181 VNGNLPTGFFDNKEADLLAHGIKLVKPDIKDEYKEFEKLIQDDLQVVDSRMEEEE 235


>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
            protein similar to TAR RNA loop binding protein [Homo
            sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
            rRNA Methylase (RNA methyltransferase, TrmH) family
          Length = 1850

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 547  SEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIIS----KLKKDEKPK 678
            SE EC+  C+   ++   +D  EDL     K++++      K DE+PK
Sbjct: 1572 SEFECVPTCLMDNVLSFLNDVREDLRASMAKDVVTIKNEGFKIDEEPK 1619


>At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger); similar to GI:4928397
           from [Arabidopsis thaliana] (Plant Mol. Biol. 40 (4),
           579-590 (1999))
          Length = 413

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 740 KNPQDLASSTRRTQGVNLVLSCVNRN 817
           K+  D++SST +T G +  +SC N+N
Sbjct: 381 KSQSDISSSTLKTNGSSSSVSCFNKN 406


>At5g02170.1 68418.m00138 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 526

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 646 ISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEEPTGPGFEYKTHSRRKSGV 798
           +S+ + ++ P P PRS R + + L G+T     PT   F      RR+S V
Sbjct: 36  LSRNRSEDVPVPWPRSYRQSMDLLTGVT----PPTSTSFVSSFRQRRQSSV 82


>At3g29230.1 68416.m03667 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 600

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 362 FLEDLRSQPPCA*LRSVASLHSVVVPDPVKESWHLA 255
           F E L+  P CA L  V  LH+ ++   + E  H+A
Sbjct: 19  FEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIA 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,211,499
Number of Sequences: 28952
Number of extensions: 413718
Number of successful extensions: 1224
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)