Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30532
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 42 8e-05
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 32 0.083
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 31 0.14
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 28 1.0
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 26 4.1
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 26 5.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 5.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 7.2
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 25 9.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.5
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 41.9 bits (94), Expect = 8e-05
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 25 QIGGEKNGGTRTV-PL-KRRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLA 198
++ G KNGG R V P + +YP + + + ++R +L GTVCILLA
Sbjct: 5 KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARK--AVRPTKLRASLAPGTVCILLA 62
Query: 199 GRHAGKRV 222
GR GKRV
Sbjct: 63 GRFRGKRV 70
Score = 39.1 bits (87), Expect = 5e-04
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 LVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXE 431
+VTGP+ N P+RR+ RYVI TS +I + + K F YF +
Sbjct: 81 VVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK-FTKAYF----AKQKRSGPVKK 135
Query: 432 GDDIFATKKEKYVPSEQRKTDQKTVE 509
+ FA K +R DQK V+
Sbjct: 136 DEAFFAENAPKNALPAERIADQKAVD 161
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 31.9 bits (69), Expect = 0.083
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 469 FHLSSAKPIRRQSRGCDQSHRSPTRQEGAPRIPQSGLRTP 588
F +AK RRQ H S TR+ G+P P SG TP
Sbjct: 108 FSTPAAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTP 147
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.14
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -3
Query: 281 IESKRSSN*SRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEAQIF 102
++ KRS+ R + P S+ + P LP+RR +T I L ++ CLL P ++ F
Sbjct: 7 VKEKRST--LRSVAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAF 64
Query: 101 S 99
S
Sbjct: 65 S 65
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 361 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 498
+NTS +T IRS SN + K + T LP+ K+N F S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 213 QEGCTCWNSAQRSALVT 263
+ G +CWN RSA+VT
Sbjct: 426 ENGQSCWNGPHRSAIVT 442
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 156 PTQPEDRNCLHSPR----W*TCRQEGCTCWNSAQRSALVTGPFAFNSCPLRRIPQRYVIG 323
P P+DRN + QEG T WNS L T P A S R+V+G
Sbjct: 321 PLDPKDRNAWEESELKKLYTLVEQEG-TRWNSIANK-LGTSPAACMS------QWRFVVG 372
Query: 324 TSTRISLGNFKL 359
TST+ ++ KL
Sbjct: 373 TSTQETIDRRKL 384
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 5.4
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Frame = +1
Query: 331 PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSR 510
P F +TSN +TS I S R+ ++ +TS K T +S+A S
Sbjct: 888 PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947
Query: 511 GCDQSHRSPTRQEGAPRIPQ--SGLRTPLEPISPSAAL 618
+ P + + + S + T + P ++L
Sbjct: 948 SSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSL 985
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 533 ARPDKKVLRGYLKAAFGLRSSQYPHRLR 616
A PD++VLR LKAA L+ P R
Sbjct: 1401 ANPDEEVLRAKLKAAERLQKPAIPRTRR 1428
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 576 AALRYPRSTFLSGRAPMALITASRLSSDRFCA-AQMERISLFLWQRCHHP 430
A+ R P S+ LS AP L A + + F Q SL LW CH P
Sbjct: 88 ASRRIPVSSLLSEPAPHGL--AGQPTHPTFLYYIQSVAPSLCLWDACHFP 135
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 334 EFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 459
+ HS+ S+ +NT+ +++S +S+ +V+ V T K
Sbjct: 735 DLHSSLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSK 776
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,988
Number of Sequences: 5004
Number of extensions: 59419
Number of successful extensions: 244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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