Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30532
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 57 1e-08
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 56 2e-08
03_05_0690 + 26778567-26778804,26778950-26779024,26779995-267800... 29 3.2
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 28 5.6
06_01_0767 + 5732573-5732670,5733223-5733278,5733928-5734007,573... 28 5.6
10_08_0247 - 16151969-16152091,16152599-16152718,16153480-161535... 28 7.4
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 7.4
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 27 9.8
11_06_0521 + 24544254-24544964 27 9.8
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 27 9.8
02_03_0401 - 18604244-18604303,18605059-18605346,18605459-186055... 27 9.8
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 57.2 bits (132), Expect = 1e-08
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Frame = +3
Query: 255 LVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEG 434
L+TGPF N P+RR+ Q YVI TST++ + K+ K F+D YF EG
Sbjct: 105 LITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF---ARDKKAKAKKTEG 160
Query: 435 DDIFATKKE--KYVPSEQRKTDQKTVERL*SKPSE--PDPTRRCSADTSKRP 578
++F T+KE K +P + +K DQK V+ K E PD A S+ P
Sbjct: 161 -ELFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPDLKSYLGARNSRWP 210
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 40 KNGGTRTVPLK----RRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 207
KNGGT K FYP + + R + ++R + GTV ILLAGR+
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTR--KANPTKLRSTITPGTVLILLAGRY 88
Query: 208 AGKRV 222
GKRV
Sbjct: 89 MGKRV 93
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 56.4 bits (130), Expect = 2e-08
Identities = 44/114 (38%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Frame = +3
Query: 255 LVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEG 434
LVTGPF N P+RR+ Q YVI TST++ + + K F+D YF EG
Sbjct: 128 LVTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG 183
Query: 435 DDIFATKKE--KYVPSEQRKTDQKTVERL*SKPSE--PDPTRRCSADTSKRPSD 584
++F T+KE K +P E +K DQK V+ K E PD A S R D
Sbjct: 184 -ELFETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPDLKTYLGARFSLRDGD 235
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 91 PTQEKICASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRV 222
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRV
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRV 116
>03_05_0690 +
26778567-26778804,26778950-26779024,26779995-26780099,
26780869-26781000,26781432-26781571,26782213-26782323,
26782690-26782812,26784166-26784267,26784536-26784546,
26784878-26785103,26785363-26785401,26785413-26785583,
26785674-26785753,26785976-26786039
Length = 538
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 591 ERSPKAALRYPRSTFLSGRAPMALITASRLSSDRFCAAQMERISLFLWQRCHH 433
+++P + + RS +S + I S L S +C R+SL CHH
Sbjct: 364 QKNPTPHIPHRRSMAVSASQLTSRILLSLLLSRNYCCVNKGRLSLNFQWHCHH 416
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = +1
Query: 325 PPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQ 504
P P+ H+ + TS T++ I + +A +V T+ Q+++ PI++
Sbjct: 406 PHPQQHNEVLLQKGTSRTSTTQLINHQAPSLQHAVKVETTQQQQQQQPPKSIKPAPIQQS 465
Query: 505 SRGCDQSHRSPTRQEGAPRIPQS 573
S Q + + PR+P S
Sbjct: 466 SAYPQQYPKHQHHNQALPRVPPS 488
>06_01_0767 +
5732573-5732670,5733223-5733278,5733928-5734007,
5735334-5735372,5735563-5735950,5736049-5737562
Length = 724
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 523 SHRSPTRQEGAPRIPQSGLR 582
SHR P QEGAP P S +R
Sbjct: 157 SHRWPEAQEGAPAFPPSTMR 176
>10_08_0247 -
16151969-16152091,16152599-16152718,16153480-16153545,
16153663-16153711,16154048-16154185,16154291-16154377,
16155658-16155758,16155847-16155957,16156606-16157025,
16157819-16157983,16158863-16158994,16159189-16159233
Length = 518
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 475 LSSAKPIRRQSRGCDQSHRSPTRQEGAPRIPQSG 576
+SS+ I ++ G Q R+EG+ RIP SG
Sbjct: 149 VSSSSAISKEEEGQIQEEEEGKRKEGSTRIPGSG 182
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 301 FLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 423
FL+ + PP + H C N S++I R + N QSN
Sbjct: 545 FLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 284 RIESKRSSN*SRPLGRIPTSTTLLPACLPARRMQT-VPIFRLGRILR 147
R E +RS + P +P LLP +P R +P FR+ +++R
Sbjct: 176 REERRRSPDRKEPTPPLPPPPPLLPELIPGRTGGIYIPPFRMAQMMR 222
>11_06_0521 + 24544254-24544964
Length = 236
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 1 KKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKI 108
KK Q+GG+ +GG +T P RR P I
Sbjct: 166 KKRQASSSQLGGDHDGGQQTKPPARRPGLRPRMPSI 201
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 397 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSRGCDQSHR--SPTRQEGAPR 561
RS + + R S P+++ + S P RR SHR SP R+ G+PR
Sbjct: 13 RSGRSRSRSPARDRGSPPRRRERSPAARSRSPRRRSPVKSTSSHRERSPVRRNGSPR 69
>02_03_0401 -
18604244-18604303,18605059-18605346,18605459-18605562,
18605640-18605686,18605790-18605860,18606482-18606601,
18606686-18606856,18607304-18607393,18608949-18609041,
18609141-18609461
Length = 454
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 456 KEKYVPSEQRKTDQKTVERL*SKPSEPD--PTRRCSADTSKRPSDSARANIPIGCAS 620
K K + S R E+L + EP P C A TSK P+ IP+G A+
Sbjct: 120 KVKLLRSSIRAYHGDAEEKLSDRKGEPVNYPFHNCGASTSKLPAHVYHKKIPMGEAA 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,477,797
Number of Sequences: 37544
Number of extensions: 442432
Number of successful extensions: 1241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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