Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30532
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0) 62 4e-10
SB_12579| Best HMM Match : zf-C2H2 (HMM E-Value=5.4e-28) 31 0.62
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 31 0.81
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35) 28 5.7
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) 28 5.7
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 5.7
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.6
SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35) 28 7.6
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 28 7.6
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 28 7.6
>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
Length = 112
Score = 62.1 bits (144), Expect = 4e-10
Identities = 35/82 (42%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDI 443
PF N PLRRIPQ YVI TST I + + KLP+H F D+ + +D+
Sbjct: 2 PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESY-----FKGEPKKKKRSEDM 56
Query: 444 FATKKEKYVPSEQRKTDQKTVE 509
F E+ PSEQR DQK V+
Sbjct: 57 FEEAAEEKKPSEQRIADQKAVD 78
>SB_12579| Best HMM Match : zf-C2H2 (HMM E-Value=5.4e-28)
Length = 400
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +1
Query: 427 KRVMTSLPQKKRNTFHLSSAKPIRRQSRGCDQSHRSPTRQEGAPRIPQSGLRTPLEPISP 606
+R S +KK + H S KP + GC++S+ P+ ++ +SG PL P++
Sbjct: 308 RRFANSSDRKKHSHVHTSD-KPYICKVDGCNKSYTHPSSLRKHMKLHESGGLRPLSPLTQ 366
Query: 607 S 609
S
Sbjct: 367 S 367
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 31.1 bits (67), Expect = 0.81
Identities = 28/107 (26%), Positives = 42/107 (39%)
Frame = +1
Query: 325 PPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQ 504
PP SN N S +R I ++SN + + +L RNT +S KP+
Sbjct: 268 PPAPVSQLQSNSNNAS---AARAITTSSNPSISTSVLQGNLSTNARNT---ASPKPVIVN 321
Query: 505 SRGCDQSHRSPTRQEGAPRIPQSGLRTPLEPISPSAALLNLRIRNKI 645
S+ + S + P++ P+E I AA L N I
Sbjct: 322 SQAVSIGNSSSPAPQVQPQVKIVNTPIPIEVIKEHAAKLKNFFNNLI 368
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 364 NTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSRGCDQ--SHRSP 537
+T + S +R+ + V S+A + +P+KK+NTF+ + K Q+ + S++
Sbjct: 157 STEARVQSENVRNKT-VYSSAMG-LPRIPKKKKNTFYHNDNKTHSTQTGPWFRAWSNQKR 214
Query: 538 TRQEGAPRIPQSGLRTPL 591
R E P+ +SG+ P+
Sbjct: 215 ERPEPPPKSTESGIEEPI 232
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 96 SGVEGLPTFEGYCSGSPILLTSNLLYNNSQ 7
+G +G P GY S PIL T LL NSQ
Sbjct: 464 TGAQGNPYSSGYRSRQPILPTKRLLAVNSQ 493
>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1671
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 440 HLCHKKREIRSI*AAQNRSEDSREAVIKAIG 532
H KKR IRSI + ED R A+++ +G
Sbjct: 1540 HFTTKKRNIRSIRQLISMREDERRALLRGLG 1570
>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
Length = 238
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 451 QKKRNTFHLSSAKPIRRQSRGCDQSHRSPTRQEGAPRIPQSGLRTPLEPISPSAALLNL 627
QK + LSS I R+S G SP R EG+P+ + R+ + + S L L
Sbjct: 19 QKIDAEYKLSSLHSILRRSLGVRAYGNSPVRGEGSPKKARMSFRSRQQRDASSVVLCAL 77
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 508 RGCDQSHRSPTRQEGAPRIPQSGLRTPL 591
+G ++ H QEG ++PQ G +TP+
Sbjct: 673 QGQEEGHSQDQGQEGTNQVPQQGEKTPI 700
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +1
Query: 328 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQS 507
P +S +S+ Q + TS AS V RV + +KK + FH S K R+
Sbjct: 599 PTPHYSHSSHGQEPKFVYTSPPAEFASPVY----RVPSKEGEKKDDHFHNGSHKSGSRKR 654
Query: 508 RGCDQSHRSPTRQEGAPRIP 567
+ + +H P Q +P
Sbjct: 655 KSSNPAHAVPQGQRHIQAVP 674
>SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)
Length = 568
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 32 EVRRMGEPEQYPSNVGSPSTPLRRKSVLHLVAVHSASMYAG 154
+V+ + E + +VGS + P+R +SVL + HS AG
Sbjct: 424 DVQNVAETMRELRDVGSNTCPVRPESVLEFLRKHSGMFAAG 464
>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 830
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 447 ATKKEKYVPSEQRKTDQKTVERL*SKPSEPDPTRRCSADTSKRPSDSARAN 599
A K +K S+ + D + VE SKP E P ++ + + +PS S +N
Sbjct: 668 AFKPDKQSVSQSKCKDSRPVE---SKPKENRPEKKKATKPNPKPSSSQESN 715
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 532 SPTRQEGAPRIPQSGLRTPLEPISPSAALL 621
SPT + G P +P S T P+ P +++L
Sbjct: 299 SPTTENGTPDVPHSSFPTTGIPVIPQSSVL 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,600,262
Number of Sequences: 59808
Number of extensions: 474382
Number of successful extensions: 1522
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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