Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30532
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 73 2e-13
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 31 0.94
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 31 0.94
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 31 0.94
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 29 2.9
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 2.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 2.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 2.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 2.9
AF038618-10|AAB92065.2| 474|Caenorhabditis elegans P38 map kina... 29 3.8
AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math ... 28 5.0
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 27 8.7
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 27 8.7
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 27 8.7
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/85 (44%), Positives = 50/85 (58%)
Frame = +3
Query: 255 LVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEG 434
LVTGP N PLRRI Q +VI TS ++++ K+P+H ND+YF G
Sbjct: 102 LVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF------KRKSTAQKTG 155
Query: 435 DDIFATKKEKYVPSEQRKTDQKTVE 509
+IFA+ K +Y SEQRK D KTV+
Sbjct: 156 KNIFASGKTEYTVSEQRKKDIKTVD 180
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 515 VIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 619
++ AI P+ K L GYL F L +QYPH+++F
Sbjct: 183 ILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 154 IRPNLKIGTVCILLAGRHAGKRV 222
+R L GTV I+LAGRH GKRV
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRV 89
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 30.7 bits (66), Expect = 0.94
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 328 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRR-- 501
PP FH A N Q +MM +RI A + Q R R T +S + I
Sbjct: 639 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRT------PSRQTISVSDSHKIHELA 691
Query: 502 QSRGCDQSHRSPTRQEGAPRIPQSGLRTPLEPISP 606
+SR Q +S T + + + +G+ TP P
Sbjct: 692 KSRENQQRQQSATPKTPSESVSTTGVVTPQRQFLP 726
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 30.7 bits (66), Expect = 0.94
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 328 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRR-- 501
PP FH A N Q +MM +RI A + Q R R T +S + I
Sbjct: 621 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRT------PSRQTISVSDSHKIHELA 673
Query: 502 QSRGCDQSHRSPTRQEGAPRIPQSGLRTPLEPISP 606
+SR Q +S T + + + +G+ TP P
Sbjct: 674 KSRENQQRQQSATPKTPSESVSTTGVVTPQRQFLP 708
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 30.7 bits (66), Expect = 0.94
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 328 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRR-- 501
PP FH A N Q +MM +RI A + Q R R T +S + I
Sbjct: 621 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRT------PSRQTISVSDSHKIHELA 673
Query: 502 QSRGCDQSHRSPTRQEGAPRIPQSGLRTPLEPISP 606
+SR Q +S T + + + +G+ TP P
Sbjct: 674 KSRENQQRQQSATPKTPSESVSTTGVVTPQRQFLP 708
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 85 FYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 219
FYPT+ A S G P + PN ++ V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 450 TKKEKYVPSEQRKT----DQKTVERL*SKPSEPDPTRRCSADTSKRPSDSARANIP 605
TKKEK S +KT +K+ E+ KP P P + K+ S S A P
Sbjct: 1827 TKKEKSPSSPTKKTGDESKEKSPEKPEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 450 TKKEKYVPSEQRKT----DQKTVERL*SKPSEPDPTRRCSADTSKRPSDSARANIP 605
TKKEK S +KT +K+ E+ KP P P + K+ S S A P
Sbjct: 1827 TKKEKSPSSPTKKTGDESKEKSPEKPEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 450 TKKEKYVPSEQRKT----DQKTVERL*SKPSEPDPTRRCSADTSKRPSDSARANIP 605
TKKEK S +KT +K+ E+ KP P P + K+ S S A P
Sbjct: 1827 TKKEKSPSSPTKKTGDESKEKSPEKPEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 450 TKKEKYVPSEQRKT----DQKTVERL*SKPSEPDPTRRCSADTSKRPSDSARANIP 605
TKKEK S +KT +K+ E+ KP P P + K+ S S A P
Sbjct: 1827 TKKEKSPSSPTKKTGDESKEKSPEKPEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>AF038618-10|AAB92065.2| 474|Caenorhabditis elegans P38 map kinase
family protein 3 protein.
Length = 474
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 449 HKKREIRSI*AAQNRSEDSREAVIKAIGARPDKKV 553
HK+R R + +A N SED + + K + P+K++
Sbjct: 374 HKRRNFRDVFSAHNPSEDFIDLLEKLLVLDPEKRI 408
>AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math
domain containingprotein 47 protein.
Length = 683
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +1
Query: 376 MITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAK---PIRRQSRGCDQSHRSPTRQ 546
++T ++S V S+ RV T L Q+ + + + P R+Q+ Q+ SP +
Sbjct: 296 IVTVNAVKSYEGVLSDYIRV-TPLTQQAKTSAPAETPDLQTPPRQQASAKPQA--SPAKS 352
Query: 547 EGAPRIPQSGLRTPL--EPISPSA 612
GAP++PQ P P SPSA
Sbjct: 353 AGAPQLPQKVPLFPSGGAPSSPSA 376
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +1
Query: 349 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSRGCDQSH 528
T++C+ + S S ++S+ KRV +L K+R+ H SS++ + ++ GC H
Sbjct: 179 TTDCEEEKSRVHSE----ISRLRSDIKRVH-ALRDKERSK-HSSSSQELLKRLNGCISQH 232
Query: 529 RSPTRQE 549
R+E
Sbjct: 233 DIAIREE 239
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 391 RIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSRGCDQSHRSPTRQE 549
R+ SA ++SN +S P K+R + S K S +S +SP + E
Sbjct: 854 RVSSAKRMRSNDGASTSSRPAKRRRSNASSPKKQTASSSASSTKSLKSPVKLE 906
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 391 RIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSRGCDQSHRSPTRQE 549
R+ SA ++SN +S P K+R + S K S +S +SP + E
Sbjct: 808 RVSSAKRMRSNDGASTSSRPAKRRRSNASSPKKQTASSSASSTKSLKSPVKLE 860
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,245
Number of Sequences: 27780
Number of extensions: 351715
Number of successful extensions: 1121
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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