Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30531
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...    31   0.038
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   1.1  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   2.5  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    23   7.7  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    23   7.7  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    23   7.7  

>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 152 LKALIGPSILNADLSQLYEESQKLLDNGADYLHL 253
           ++A I PS+L  D + L +E  ++L  G+D+LH+
Sbjct: 2   VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHV 35



 Score = 28.7 bits (61), Expect = 0.20
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +1

Query: 256 VMDGQFVPNLTFGHPVV 306
           VMD QFVPNLT G P+V
Sbjct: 37  VMDAQFVPNLTIG-PIV 52


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 137 KMTRHLKALIGPSILNADLSQLYEESQKLL 226
           K   HLK +I  + LNA+  QLY E   L+
Sbjct: 779 KQHPHLKIIIMSATLNAEKFQLYFEGSNLI 808


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 122 IRSKTKMTRHLKALIGPSILNADLSQLYEESQKLLDN 232
           IRSK ++ +H K+ +G ++  A   + +E+ +    N
Sbjct: 559 IRSKLQLLKHFKSYMGQNLSKAVQDESFEKPKNSTSN 595


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 32  IRFKSLLIDDLTQPKSNFWE 91
           I  KS++   LT+P+ N+W+
Sbjct: 725 ISTKSIMDRPLTEPEPNYWQ 744


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 107 FFRRKIRSKTKMT 145
           FF +KIR+K+KMT
Sbjct: 565 FFGKKIRAKSKMT 577


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 38  FKSLLIDDLTQPKSNFWE 91
           F +L I   + P SNFWE
Sbjct: 779 FHNLKISGASSPVSNFWE 796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,830
Number of Sequences: 5004
Number of extensions: 15538
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)