Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30531
         (306 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31691| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-05
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  31   0.24 
SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096)                 27   3.0  
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  

>SB_31691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +2

Query: 164 IGPSILNADLSQLYEESQKLLDNGADYLHL 253
           IGPSILN DLS L +E  +LL  GADYLHL
Sbjct: 42  IGPSILNGDLSCLADECNRLLQCGADYLHL 71



 Score = 34.3 bits (75), Expect = 0.020
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 256 VMDGQFVPNLTFGHPVV 306
           VMDG FVPNLTFG P+V
Sbjct: 73  VMDGHFVPNLTFGAPLV 89


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 162 LLDLQFSMLIYLNYMKNLKSCLIMEQIIYI*CNGW 266
           LL LQ     Y NY+KNL S     Q  Y+ C GW
Sbjct: 112 LLTLQTDSYSYKNYIKNLLSHPQESQESYLQCGGW 146


>SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096)
          Length = 322

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 137 KMTRHLKALIGPSILNADLSQLYEESQKLLDNGADYLHLV 256
           KM R L   +G  +  +D++QL+++     D   DY+ LV
Sbjct: 246 KMLRELLTTMGQRMKYSDVTQLFDDVGADQDGNLDYVKLV 285


>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 104  KFFRRKIRSKTKMTRHLK 157
            K FRR++  K KM RHL+
Sbjct: 1306 KMFRRELTVKMKMNRHLR 1323


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 170  PSILNADLSQLYEESQKLLDNGA 238
            P I   D S L +   KL+DNGA
Sbjct: 978  PMISEDDASHLLDNDNKLMDNGA 1000


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,919,296
Number of Sequences: 59808
Number of extensions: 92023
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)