Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30531
         (306 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC072401-1|AAH72401.1|  228|Homo sapiens ribulose-5-phosphate-3-...    46   3e-05
BC016764-1|AAH16764.1|  228|Homo sapiens ribulose-5-phosphate-3-...    46   3e-05
BC005148-1|AAH05148.2|  228|Homo sapiens ribulose-5-phosphate-3-...    46   3e-05
DQ120706-1|ABC40667.1|  228|Homo sapiens rcRPE protein.                44   1e-04

>BC072401-1|AAH72401.1|  228|Homo sapiens
           ribulose-5-phosphate-3-epimerase protein.
          Length = 228

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +2

Query: 164 IGPSILNADLSQLYEESQKLLDNGADYLHL 253
           IGPSILN+DL+ L  E  ++LD+GADYLHL
Sbjct: 7   IGPSILNSDLANLGAECLRMLDSGADYLHL 36



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 VMDGQFVPNLTFGHPVV 306
           VMDG FVPN+TFGHPVV
Sbjct: 38  VMDGHFVPNITFGHPVV 54


>BC016764-1|AAH16764.1|  228|Homo sapiens
           ribulose-5-phosphate-3-epimerase protein.
          Length = 228

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +2

Query: 164 IGPSILNADLSQLYEESQKLLDNGADYLHL 253
           IGPSILN+DL+ L  E  ++LD+GADYLHL
Sbjct: 7   IGPSILNSDLANLGAECLRMLDSGADYLHL 36



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 VMDGQFVPNLTFGHPVV 306
           VMDG FVPN+TFGHPVV
Sbjct: 38  VMDGHFVPNITFGHPVV 54


>BC005148-1|AAH05148.2|  228|Homo sapiens
           ribulose-5-phosphate-3-epimerase protein.
          Length = 228

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +2

Query: 164 IGPSILNADLSQLYEESQKLLDNGADYLHL 253
           IGPSILN+DL+ L  E  ++LD+GADYLHL
Sbjct: 7   IGPSILNSDLANLGAECLRMLDSGADYLHL 36



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 VMDGQFVPNLTFGHPVV 306
           VMDG FVPN+TFGHPVV
Sbjct: 38  VMDGHFVPNITFGHPVV 54


>DQ120706-1|ABC40667.1|  228|Homo sapiens rcRPE protein.
          Length = 228

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +2

Query: 164 IGPSILNADLSQLYEESQKLLDNGADYLHL 253
           IGPSILN+DL+ L  +  ++LD+GADYLHL
Sbjct: 7   IGPSILNSDLANLGAKCLQMLDSGADYLHL 36



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 VMDGQFVPNLTFGHPVV 306
           VMDG FVPN+TFGHPVV
Sbjct: 38  VMDGHFVPNITFGHPVV 54


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,684,697
Number of Sequences: 237096
Number of extensions: 460115
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)