Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30531
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical pr...    42   6e-05

>U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical
           protein F08F8.7 protein.
          Length = 227

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +2

Query: 152 LKALIGPSILNADLSQLYEESQKLLDNGADYLHL 253
           L+  + PSILNADL+ L  E +KLL  GAD+LHL
Sbjct: 3   LRPFVCPSILNADLASLASECKKLLAAGADWLHL 36



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 VMDGQFVPNLTFGHPVV 306
           VMDG FVPNLTFGHPVV
Sbjct: 38  VMDGHFVPNLTFGHPVV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,428,335
Number of Sequences: 27780
Number of extensions: 78043
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)