Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30531
(306 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63290.1 68414.m07155 ribulose-phosphate 3-epimerase, cytosol... 33 0.029
At3g01850.2 68416.m00129 ribulose-phosphate 3-epimerase, cytosol... 33 0.038
At3g01850.1 68416.m00128 ribulose-phosphate 3-epimerase, cytosol... 33 0.038
At5g61410.2 68418.m07705 ribulose-phosphate 3-epimerase, chlorop... 29 0.82
At5g61410.1 68418.m07704 ribulose-phosphate 3-epimerase, chlorop... 29 0.82
At3g59410.1 68416.m06626 protein kinase family protein low simil... 25 7.6
>At1g63290.1 68414.m07155 ribulose-phosphate 3-epimerase, cytosolic,
putative / pentose-5-phosphate 3-epimerase, putative
strong similarity to D-ribulose-5-phosphate 3-epimerase
[Oryza sativa] GI:6007803; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family
Length = 227
Score = 33.5 bits (73), Expect = 0.029
Identities = 12/30 (40%), Positives = 24/30 (80%)
Frame = +2
Query: 164 IGPSILNADLSQLYEESQKLLDNGADYLHL 253
I PS+L++D + L E+++++D GA++LH+
Sbjct: 8 IAPSMLSSDFANLAAEAKRMIDLGANWLHM 37
Score = 29.1 bits (62), Expect = 0.62
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 256 VMDGQFVPNLTFGHPVV 306
+MDG FV NLT G PV+
Sbjct: 39 IMDGHFVSNLTIGAPVI 55
>At3g01850.2 68416.m00129 ribulose-phosphate 3-epimerase, cytosolic,
putative / pentose-5-phosphate 3-epimerase, putative
strong similarity to D-ribulose-5-phosphate 3-epimerase
[Oryza sativa] GI:6007803; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family; contains
non-consensus splice sites at exon 1 and exon2
Length = 225
Score = 33.1 bits (72), Expect = 0.038
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 164 IGPSILNADLSQLYEESQKLLDNGADYLHL 253
I PS+L++D + L E+ +++D GA++LH+
Sbjct: 6 IAPSMLSSDFANLAAEANRMIDLGANWLHM 35
Score = 32.3 bits (70), Expect = 0.066
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 256 VMDGQFVPNLTFGHPVV 306
+MDG FVPNLT G PV+
Sbjct: 37 IMDGHFVPNLTIGAPVI 53
>At3g01850.1 68416.m00128 ribulose-phosphate 3-epimerase, cytosolic,
putative / pentose-5-phosphate 3-epimerase, putative
strong similarity to D-ribulose-5-phosphate 3-epimerase
[Oryza sativa] GI:6007803; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family; contains
non-consensus splice sites at exon 1 and exon2
Length = 225
Score = 33.1 bits (72), Expect = 0.038
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 164 IGPSILNADLSQLYEESQKLLDNGADYLHL 253
I PS+L++D + L E+ +++D GA++LH+
Sbjct: 6 IAPSMLSSDFANLAAEANRMIDLGANWLHM 35
Score = 32.3 bits (70), Expect = 0.066
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 256 VMDGQFVPNLTFGHPVV 306
+MDG FVPNLT G PV+
Sbjct: 37 IMDGHFVPNLTIGAPVI 53
>At5g61410.2 68418.m07705 ribulose-phosphate 3-epimerase,
chloroplast, putative / pentose-5-phosphate 3-epimerase,
putative strong similarity to SP|Q43157
Ribulose-phosphate 3-epimerase, chloroplast precursor
(EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE)
(RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family
Length = 281
Score = 28.7 bits (61), Expect = 0.82
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 256 VMDGQFVPNLTFGHPVV 306
VMDG+FVPN+T G VV
Sbjct: 91 VMDGRFVPNITIGPLVV 107
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/46 (26%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 122 IRSKTKMTRHLKA--LIGPSILNADLSQLYEESQKLLDNGADYLHL 253
+++ +++ R K+ ++ PSIL+A+ ++L E+ + + G D++H+
Sbjct: 44 VKASSRVDRFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV 89
>At5g61410.1 68418.m07704 ribulose-phosphate 3-epimerase,
chloroplast, putative / pentose-5-phosphate 3-epimerase,
putative strong similarity to SP|Q43157
Ribulose-phosphate 3-epimerase, chloroplast precursor
(EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE)
(RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family
Length = 281
Score = 28.7 bits (61), Expect = 0.82
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 256 VMDGQFVPNLTFGHPVV 306
VMDG+FVPN+T G VV
Sbjct: 91 VMDGRFVPNITIGPLVV 107
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/46 (26%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 122 IRSKTKMTRHLKA--LIGPSILNADLSQLYEESQKLLDNGADYLHL 253
+++ +++ R K+ ++ PSIL+A+ ++L E+ + + G D++H+
Sbjct: 44 VKASSRVDRFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV 89
>At3g59410.1 68416.m06626 protein kinase family protein low
similarity to GCN2 eIF2alpha kinase [Mus musculus]
GI:6066585; contains Pfam profiles PF03129: Anticodon
binding domain, PF00069: Protein kinase domain
Length = 1241
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 146 RHLKALIGPSILNADLSQLYEESQKLLDNGADYLHL 253
+HL+ + P L +D Q ++ KLL NG D L L
Sbjct: 814 KHLEVI--PMRLLSDCPQFSRKTVKLLTNGGDMLEL 847
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,057,399
Number of Sequences: 28952
Number of extensions: 70812
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -