Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30530
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.63 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.7  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 120 KRAASPM-TAASCSTARNMDLSTLGGRFRLRS 28
           +R   P+ T  S S  ++ D+S+   RFRLRS
Sbjct: 34  RRLRRPLKTTQSVSVTKDQDVSSSVNRFRLRS 65


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 504 HIVGHQVHAQWKVVN 548
           H  GH +HAQ  VVN
Sbjct: 324 HHAGHHIHAQHHVVN 338


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 249 GGRHRSSRLCAVPSSSSP 196
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 249 GGRHRSSRLCAVPSSSSP 196
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 249 GGRHRSSRLCAVPSSSSP 196
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 249 GGRHRSSRLCAVPSSSSP 196
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,629
Number of Sequences: 336
Number of extensions: 4502
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)