Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30530
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 144 9e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 144 1e-35
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 29 0.90
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 2.1
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 2.1
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 2.1
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.6
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 6.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 6.3
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 8.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.4
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 8.4
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.4
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 144 bits (350), Expect = 9e-36
Identities = 67/89 (75%), Positives = 74/89 (83%)
Frame = -3
Query: 507 YEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 328
YEQ++SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR
Sbjct: 57 YEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMR 116
Query: 327 GAFGKPQGTVARVRIGQPIMSVRSMTGGR 241
AFGKP G VARV IGQ +MSVR+ R
Sbjct: 117 HAFGKPNGLVARVNIGQVLMSVRTKDSSR 145
Score = 108 bits (260), Expect = 7e-25
Identities = 45/56 (80%), Positives = 51/56 (91%)
Frame = -1
Query: 674 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDD 507
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS++
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNE 56
Score = 75.4 bits (177), Expect = 8e-15
Identities = 32/65 (49%), Positives = 45/65 (69%)
Frame = -2
Query: 253 DRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRP 74
D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLN 201
Query: 73 EHGPL 59
+ G L
Sbjct: 202 KRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 144 bits (349), Expect = 1e-35
Identities = 67/89 (75%), Positives = 74/89 (83%)
Frame = -3
Query: 507 YEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 328
YEQ++SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR
Sbjct: 57 YEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMR 116
Query: 327 GAFGKPQGTVARVRIGQPIMSVRSMTGGR 241
AFGKP G VARV IGQ +MSVR+ R
Sbjct: 117 HAFGKPNGLVARVNIGQILMSVRTKDSSR 145
Score = 108 bits (260), Expect = 7e-25
Identities = 45/56 (80%), Positives = 51/56 (91%)
Frame = -1
Query: 674 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDD 507
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS++
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNE 56
Score = 75.4 bits (177), Expect = 8e-15
Identities = 32/65 (49%), Positives = 45/65 (69%)
Frame = -2
Query: 253 DRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRP 74
D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLN 201
Query: 73 EHGPL 59
+ G L
Sbjct: 202 KRGSL 206
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 28.7 bits (61), Expect = 0.90
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 438 SSLRGTYCSRYVLPPKPLSSAVHIVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPTEPR 617
S L+ +C+++ + S A HI+ H V A+ K V + S + + DT L T
Sbjct: 54 SILKCLHCNKWFCNVRGKSGASHIISHLVRARHKQVALHS-HSSLSDTVLECYNCGTRNV 112
Query: 618 FRIRFI 635
F + FI
Sbjct: 113 FLLGFI 118
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 107 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 238
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 617 SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDD 507
S FC PDPK K A+ DD P + H+ S+D
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 107 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 238
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 107 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 238
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 236 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 107 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 238
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 301 STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 417
+T +LAKR T PSL P S+ H I + ++ KS A+
Sbjct: 957 TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 222 CAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 106
C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 31 CVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 234 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCS 82
SS + +P SSS STY S + S ++S S + ++SP+ ++S S
Sbjct: 651 SSSISTIPISSS----LSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSS 697
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 476 ASKASELSCSYRRTPSARTVESRQRSLSSYPNRRYGSWDQ 595
+S SEL C+Y T S V++ ++ S + Y + DQ
Sbjct: 238 SSSTSELPCTYGNTSSIFQVKNEMSNIKSAISEGYIAHDQ 277
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 234 SSRLCAVPSSSSPDVKRSTYQRSGVS 157
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 432 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 328
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 465 RYVLPPKPLSSAVHIVGHQVHA--QWKVVNVRSLLTQIED 578
+Y++ SSA I+GH+++ +++V+ R+LL +D
Sbjct: 59 KYLILATEKSSAAQILGHKIYRVHKFEVIPYRNLLADDQD 98
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 607 VGVYLIPRSVSSIWV 563
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,226
Number of Sequences: 5004
Number of extensions: 73883
Number of successful extensions: 230
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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