Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30530
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 145 4e-35
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 142 3e-34
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 138 4e-33
08_01_1053 - 10716970-10717474,10718259-10718323 31 0.71
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.94
07_03_0604 + 19903654-19904598 30 2.2
02_02_0317 + 8893593-8894207 30 2.2
01_01_0406 + 3059996-3060047,3060804-3060867,3060979-3061054,306... 29 3.8
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404... 28 8.7
10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369 28 8.7
02_01_0254 - 1669461-1669590,1669833-1672318 28 8.7
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 145 bits (351), Expect = 4e-35
Identities = 65/82 (79%), Positives = 73/82 (89%)
Frame = -3
Query: 504 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRG 325
E +SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRG
Sbjct: 58 ENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 117
Query: 324 AFGKPQGTVARVRIGQPIMSVR 259
AFGKPQGT ARV IGQ ++SVR
Sbjct: 118 AFGKPQGTCARVDIGQVLLSVR 139
Score = 104 bits (250), Expect = 6e-23
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = -1
Query: 674 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVS 513
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVS 54
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = -2
Query: 229 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 59
EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 150 EALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 142 bits (343), Expect = 3e-34
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = -3
Query: 504 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRG 325
E ++SEALEA RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRG
Sbjct: 54 ENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 113
Query: 324 AFGKPQGTVARVRIGQPIMSVR 259
AFGKPQGT ARV IGQ ++SVR
Sbjct: 114 AFGKPQGTCARVDIGQVLLSVR 135
Score = 85.8 bits (203), Expect = 3e-17
Identities = 35/47 (74%), Positives = 40/47 (85%)
Frame = -1
Query: 653 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVS 513
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVS 50
Score = 75.4 bits (177), Expect = 4e-14
Identities = 32/45 (71%), Positives = 38/45 (84%)
Frame = -2
Query: 229 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDG 95
EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 146 EALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 138 bits (334), Expect = 4e-33
Identities = 62/82 (75%), Positives = 71/82 (86%)
Frame = -3
Query: 504 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRG 325
E +SSEALEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRG
Sbjct: 365 ENVSSEALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRG 424
Query: 324 AFGKPQGTVARVRIGQPIMSVR 259
AFGKP GT ARVRIGQ ++SVR
Sbjct: 425 AFGKPTGTCARVRIGQVLLSVR 446
Score = 99.1 bits (236), Expect = 3e-21
Identities = 40/50 (80%), Positives = 45/50 (90%)
Frame = -1
Query: 662 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVS 513
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVS 361
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/59 (55%), Positives = 42/59 (71%)
Frame = -2
Query: 241 AQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 65
A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 453 AHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>08_01_1053 - 10716970-10717474,10718259-10718323
Length = 189
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -3
Query: 312 PQGTVARVR--IGQPIMSVRSMTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQS 151
P GT+ ++ +GQPI TG LC++ S + R YQ G++ S
Sbjct: 94 PMGTIRQLAEFLGQPISDAEEETGVVAEIVELCSLESMKKQKINREGYQGVGITFS 149
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.1 bits (67), Expect = 0.94
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 248 PVIERTDMMGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 364
P + CP+ + + VP LP++P P++S ++P +
Sbjct: 1617 PFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>07_03_0604 + 19903654-19904598
Length = 314
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Frame = +1
Query: 73 PGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLI----RRSFDVRGT*TWHGAEPR*PV 240
PGG R R G P+H A + HH + RR RG G PR P
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHHRRVRRRRVHVAVRSSRRRHGRRGE-EGQGRRPRVPA 138
Query: 241 PSTC---HRAHGH 270
+ RAHGH
Sbjct: 139 GAQLRRRRRAHGH 151
>02_02_0317 + 8893593-8894207
Length = 204
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +1
Query: 28 GSQPEPPSKRREVHVP---GGTARCSRHWRGGP 117
G +P P + R +HVP GG R RHWR P
Sbjct: 3 GRRPRPAAGTR-IHVPQPCGGEIRWERHWRPDP 34
>01_01_0406 +
3059996-3060047,3060804-3060867,3060979-3061054,
3061142-3061243,3061327-3061542,3061615-3061695,
3062219-3062287,3062789-3062961,3063098-3063182,
3063290-3063491,3063577-3063646,3063956-3064025,
3064138-3064227,3064321-3064389,3064566-3064664,
3064814-3064924
Length = 542
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -2
Query: 727 SLSLVPEIRHQVTL*RSPWGAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERT 548
++S+ IR T R+P GQ A + N I + G I ++SS W+ +R
Sbjct: 42 AMSVFSRIRGSATNFRNPMAVGQAIANNLPQSNIIESISVAGPGYINITLSSNWI-AQRI 100
Query: 547 LTTFHCAC-TWCPTI 506
C TW P +
Sbjct: 101 QDMLVCGIKTWAPIL 115
>11_04_0467 +
18039458-18039638,18040136-18040227,18040336-18040452,
18041228-18041313,18041385-18041643,18041761-18041957,
18042181-18042213,18043371-18043862,18044236-18044299,
18045478-18045618,18045726-18045803,18047077-18047166,
18047260-18047352,18047430-18047489,18047567-18047635,
18047737-18047823,18048337-18048379,18048517-18048587,
18049050-18049143,18050335-18050447,18050909-18050998,
18051075-18051155,18052211-18052291,18052369-18052464,
18052543-18052599,18052693-18052737,18052807-18052872,
18052961-18052999
Length = 1004
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 416 IWN*SFPQFFTRYLLQQIRPASKASELSCSYRRTPSARTVESRQR 550
+WN F + F RYL + + + C R+ P A + + R
Sbjct: 550 LWNWEFEEEFQRYLPTYLDVLHEVDTMDCQERKMPGAYSEQRADR 594
>10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369
Length = 269
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -2
Query: 244 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEH 68
KA +I+ RR + K+PG QK+ + G K +A+DG ++Q +
Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205
Query: 67 GPLDAWREVQ 38
L AWR ++
Sbjct: 206 AGLPAWRPMK 215
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 5 VLIRLYIEDLSLNLPPSVERSMFRAVLHDAAVIGEAALFTQLLKLITFILCETPLL*YVD 184
V +RL++ S PPS + F A + AA +AAL LL+ + + P L +
Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLRHLLSLPDPAPHLLALL 83
Query: 185 LLTSGELELGTAQSLD---DLCLPP 250
+S L L SL LC P
Sbjct: 84 SSSSSPLRLPLGFSLSAFRSLCALP 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,584,924
Number of Sequences: 37544
Number of extensions: 567707
Number of successful extensions: 1731
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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