Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30530
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 50 1e-06
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 33 0.24
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 31 0.72
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 31 1.3
SB_37420| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 30 1.7
SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4) 29 3.9
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3) 29 5.1
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 28 6.7
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 28 6.7
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 8.9
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = -3
Query: 333 MRGAFGKPQGTVARVRIGQPIMSVRSMTGGR 241
MRGAFGKPQGTVARV IGQ I+S+R+ G +
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNK 31
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -2
Query: 244 KAQVIEALRRAKFKFPGRQK 185
KA IEALRRAKFKFPGRQK
Sbjct: 31 KAAAIEALRRAKFKFPGRQK 50
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 33.1 bits (72), Expect = 0.24
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 55 RREVHVPGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLIRRSFDVRGT*TWHGAEPR* 234
+R++HV G + + H GG L Q H + NP++ + T A
Sbjct: 10 KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAA---- 64
Query: 235 PVPSTCHR--AHGHDGLSNANTC 297
P+P+ R A +DGLSNAN C
Sbjct: 65 PIPTQTSRSVALAYDGLSNANVC 87
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 388 YPHQ*NVIVRWS**APDWDAWCVWQASGYCSTCSHWTTHHVRALYDRW 245
YP Q + WS +W + W ST ++W+TH+ + Y+ W
Sbjct: 294 YPQQLDTHNNWST-HNNWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNW 340
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 340 DWDAWCVWQASGYCSTCSHWTTHHVRALYDRW 245
+W + W ST ++W+T+H + Y+ W
Sbjct: 63 NWSTYNNWSTYNNWSTYNNWSTYHNWSTYNNW 94
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 340 DWDAWCVWQASGYCSTCSHWTTHHVRALYDRW 245
+W + W ST ++W+TH+ + Y+ W
Sbjct: 321 NWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNW 352
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 340 DWDAWCVWQASGYCSTCSHWTTHHVRALYDRWK 242
+W + W ST ++W+TH+ + Y+ W+
Sbjct: 75 NWSTYNNWSTYHNWSTYNNWSTHNNWSTYNNWR 107
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 340 DWDAWCVWQASGYCSTCSHWTTHHVRALYDRW 245
+W W CST ++W+TH+ + ++ W
Sbjct: 357 NWSILNNWSTYDNCSTYNNWSTHNNWSTHNNW 388
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -2
Query: 340 DWDAWCVWQASGYCSTCSHWTTHHVRALYDRW 245
+W + W ST +W+TH+ + +D W
Sbjct: 387 NWSTYNNWSTYNNWSTYDNWSTHNNWSTHDNW 418
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -3
Query: 483 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 364
L I C Y KN +D +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_37420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 393 GKGEVSCGYGTDPFRSSLRGTYC-SRYVLPPKPLSSAVHIVGHQ 521
G GE++CG+G D R Y R L P + + H++ H+
Sbjct: 257 GSGEMNCGHGLDTDREEWENGYAIMRLDLTPAGIGNPDHLITHR 300
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/73 (28%), Positives = 26/73 (35%)
Frame = +3
Query: 282 QCEHVLQYPEACQTHHASQSGAYQLQRTITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 461
+C V Q P AC + S GA + Y C K V CG G T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594
Query: 462 SRYVLPPKPLSSA 500
S P L ++
Sbjct: 595 SAGFYCPVELGTS 607
>SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)
Length = 617
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +2
Query: 455 LLQQIRPASKASELSCSYRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDT 628
LL QI S L+ S++ S SR +S P R + +HPD S SDT
Sbjct: 133 LLSQISALSDT--LNISHQPIASLSVCSSRILCISPVPGARLIGLETIHPDADSKSDT 188
>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 340 DWDAWCVWQASGYCSTCSHWTTHHVRALYDRW 245
+W + W ST ++W+TH+ + Y+ W
Sbjct: 53 NWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNW 84
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 340 DWDAWCVWQASGYCSTCSHWTTHHVRALYDRW 245
+W + W ST ++W+TH+ + Y+ W
Sbjct: 65 NWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNW 96
>SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)
Length = 615
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -2
Query: 436 RKGSVPYPHET--SPFPRYPHQ*NVIVRW 356
+KGS+ +PH + S +P+YP +++VR+
Sbjct: 101 KKGSIRFPHSSASSDYPQYPEGRDLVVRF 129
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 28.3 bits (60), Expect = 6.7
Identities = 24/93 (25%), Positives = 35/93 (37%)
Frame = -3
Query: 315 KPQGTVARVRIGQPIMSVRSMTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMS 136
+P + +RI P S+ SS + + S D K ++ S S
Sbjct: 95 RPLRLTSHIRILAPACGAISVAVSGAISSLVFITYTEKSKDAKDRYFE----SHKSQFDS 150
Query: 135 LRSCVKRAASPMTAASCSTARNMDLSTLGGRFR 37
++ + SPM A C TLGGRFR
Sbjct: 151 YFRTIRYSYSPMDIAVCVVGSLFVFKTLGGRFR 183
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 234 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCSTA 76
+SR P S V + ++G+S + N+ + +SC P + AS S +
Sbjct: 89 TSRTEVTPRHSENHVSNALTLKTGISITRNMQTFKSCTPAQRIPRSTASLSVS 141
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 325 CVWQASGYCSTCSHWTTHHV 266
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,157,771
Number of Sequences: 59808
Number of extensions: 616404
Number of successful extensions: 2054
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2044
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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