Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30530
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 143 1e-34
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 28 5.9
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical ... 28 7.9
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 28 7.9
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 143 bits (347), Expect = 1e-34
Identities = 66/86 (76%), Positives = 72/86 (83%)
Frame = -3
Query: 504 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRG 325
E LSSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRG
Sbjct: 58 EHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRG 117
Query: 324 AFGKPQGTVARVRIGQPIMSVRSMTG 247
A+GKPQG VARV IG + S+R G
Sbjct: 118 AYGKPQGLVARVDIGDILFSMRIKEG 143
Score = 112 bits (269), Expect = 3e-25
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = -1
Query: 674 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDD 507
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRANVD FP CVH++S++
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNE 56
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = -2
Query: 232 IEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 53
IEA RRAKFKFPGRQ I S+KWGFTK++R+++E++R EGRL +DG VQ + EHGPL
Sbjct: 149 IEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208
Query: 52 WRE 44
W E
Sbjct: 209 WIE 211
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -3
Query: 291 VRIGQPIMSVRSMTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRA 112
+RIG PI + MT + +R V + S ++ST RS +N++ + +K
Sbjct: 501 IRIGDPIATSTPMTTIERKQTREERVSTESGQSSRKST--RSSRPPDINIIECETFLKET 558
Query: 111 ASP 103
SP
Sbjct: 559 RSP 561
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -3
Query: 291 VRIGQPIMSVRSMTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRA 112
+RIG PI + MT + +R V + S ++ST RS +N++ + +K
Sbjct: 501 IRIGDPIATSTPMTTIERKQTREERVSTESGQSSRKST--RSSRPPDINIIECETFLKET 558
Query: 111 ASP 103
SP
Sbjct: 559 RSP 561
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 311 GLPNAPRIPVWSLSAPA 361
G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
protein F45E4.4 protein.
Length = 2361
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 159 SQSMNVMSLRSCVKRAASPMTAASCSTARNM 67
++ ++MS+ S R SPMT+ CS+A M
Sbjct: 88 AEKQHIMSVMSRSNRNTSPMTSRRCSSALQM 118
>AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical
protein C29F9.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 160 FTKYERDEFEKLREEGRLANDGCIVQYR 77
F K +RDEFE++R + LA + I Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 203 LELGTAQSLDDLCLPPVIERTDMMGC 280
+++ TA + C+P ++E +D++GC
Sbjct: 107 MQIKTATPVQAACIPKILEGSDILGC 132
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 203 LELGTAQSLDDLCLPPVIERTDMMGC 280
+++ TA + C+P ++E +D++GC
Sbjct: 107 MQIKTATPVQAACIPKILEGSDILGC 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,804,696
Number of Sequences: 27780
Number of extensions: 437039
Number of successful extensions: 1193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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