Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30530
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   140   1e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   140   1e-33
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   139   2e-33
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    30   1.4  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    30   1.4  
At4g17840.1 68417.m02661 expressed protein                             29   4.2  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    29   4.2  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    28   7.3  
At4g20760.1 68417.m03015 short-chain dehydrogenase/reductase (SD...    28   7.3  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   9.6  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   9.6  
At1g07490.1 68414.m00802 expressed protein                             27   9.6  

>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  140 bits (338), Expect = 1e-33
 Identities = 64/91 (70%), Positives = 74/91 (81%)
 Frame = -3

Query: 504 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRG 325
           E +SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRG
Sbjct: 58  ENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRG 117

Query: 324 AFGKPQGTVARVRIGQPIMSVRSMTGGRHRS 232
           AFGK  GT ARV IGQ ++SVR      H +
Sbjct: 118 AFGKALGTCARVAIGQVLLSVRCKDAHGHHA 148



 Score =  103 bits (247), Expect = 1e-22
 Identities = 43/54 (79%), Positives = 47/54 (87%)
 Frame = -1

Query: 674 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVS 513
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVS 54



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -2

Query: 229 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 59
           EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ KLR+E R+  DG   ++   HGPL
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  140 bits (338), Expect = 1e-33
 Identities = 64/91 (70%), Positives = 74/91 (81%)
 Frame = -3

Query: 504 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRG 325
           E +SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRG
Sbjct: 58  ENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRG 117

Query: 324 AFGKPQGTVARVRIGQPIMSVRSMTGGRHRS 232
           AFGK  GT ARV IGQ ++SVR      H +
Sbjct: 118 AFGKALGTCARVAIGQVLLSVRCKDAHGHHA 148



 Score =  103 bits (248), Expect = 9e-23
 Identities = 43/54 (79%), Positives = 47/54 (87%)
 Frame = -1

Query: 674 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVS 513
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVS 54



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 37/57 (64%), Positives = 44/57 (77%)
 Frame = -2

Query: 229 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 59
           EALRRAKFKFPGRQKI VS+KWGFTK+ R +F KLR+E R+  DG   ++   HGPL
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206


>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  139 bits (336), Expect = 2e-33
 Identities = 63/82 (76%), Positives = 72/82 (87%)
 Frame = -3

Query: 504 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRG 325
           E +SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRG
Sbjct: 58  ENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRG 117

Query: 324 AFGKPQGTVARVRIGQPIMSVR 259
           AFGK  GT ARV IGQ ++SVR
Sbjct: 118 AFGKALGTCARVAIGQVLLSVR 139



 Score =  103 bits (248), Expect = 9e-23
 Identities = 43/54 (79%), Positives = 47/54 (87%)
 Frame = -1

Query: 674 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVS 513
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVS 54



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/57 (63%), Positives = 42/57 (73%)
 Frame = -2

Query: 229 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 59
           EALRRAKFKFPGRQKI VS+KWGFTK+ R E+ KLR   R+  DG   ++   HGPL
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206


>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 310 SGYCSTCSHWTTHHVRALYDRWKAQVIEALRRAKF 206
           S  C  CSH T+ H      R  A V E +RR +F
Sbjct: 412 SRMCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRF 446


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 310 SGYCSTCSHWTTHHVRALYDRWKAQVIEALRRAKF 206
           S  C  CSH T+ H      R  A V E +RR +F
Sbjct: 445 SRMCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRF 479


>At4g17840.1 68417.m02661 expressed protein
          Length = 422

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = -3

Query: 258 SMTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCST 79
           S +GG   SS+L   P+ S  D+K+ + +R+     +++  LRS +K ++S    +S   
Sbjct: 26  SGSGGFRSSSKLFDSPACSRSDLKKRSGKRNSRLNGLSLEKLRS-IKASSSSAGQSSSEV 84

Query: 78  ARNMDLSTLG 49
             + D +  G
Sbjct: 85  IDDGDAAARG 94


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 492 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 361
           S+A+  G  C  C+ +  K CG+    I+   HP H +++     C
Sbjct: 65  SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 468 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 379
           + C K   K C +  F I    HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136


>At4g20760.1 68417.m03015 short-chain dehydrogenase/reductase (SDR)
           family protein contains Pfam profile: PF00106 short
           chain dehydrogenase
          Length = 298

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 276 PIMSVRSMTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMT 97
           P M+V ++   R R S L    SSS P+ K       G S+ + +  +R  ++   +   
Sbjct: 15  PSMAVAALK--RMRVSGLATSSSSSVPNWKGGVSMVQGASRGIGLEFVRQLLENNKNGYV 72

Query: 96  AASCSTARN-MDLSTLGGRFRLR 31
            A+C   +    LS L  RF  R
Sbjct: 73  VATCRNPKEATSLSDLKNRFSER 95


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 566 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 673
           PN R+G S+D  +PD   + D VY    G  +L   P
Sbjct: 53  PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 599 VPDPKIRIFDLGKKRANVDDFPL 531
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


>At1g07490.1 68414.m00802 expressed protein 
          Length = 107

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 234 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 133
           SS  C+VPSSSS  + RS+ ++   S +    SL
Sbjct: 48  SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,965,129
Number of Sequences: 28952
Number of extensions: 414129
Number of successful extensions: 1269
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)