Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30529
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    30   0.28 
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    29   0.86 

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 172 ATDSDRYFSL-WDATSDVNNNKVVTGLRLLNTEEYSI 279
           ATDS RYF+L WDA    N+N V  G+++ +  E S+
Sbjct: 78  ATDSFRYFTLFWDA----NDNTVSNGIKIQDCSERSL 110


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = +3

Query: 237 GDRAAIIKHGRVFHLQVYESTLKERGLIEGGDWVPVQKFDPLDPQFKDGVDYHTLTYENR 416
           GD A  I HG  F+    E  + +   I  G   P+  F   D    D VD      E R
Sbjct: 213 GDEADGINHGSYFYFASQEGIMSKDANIHAGIRTPISSFSDYD----DDVDCGFKIIEAR 268

Query: 417 AID 425
            ID
Sbjct: 269 EID 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,030
Number of Sequences: 5004
Number of extensions: 52758
Number of successful extensions: 182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)