Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30529
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)                    31   1.2  
SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_30249| Best HMM Match : Extensin_2 (HMM E-Value=0.035)              30   2.1  
SB_50860| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   2.8  
SB_16418| Best HMM Match : CXCXC (HMM E-Value=0.029)                   29   2.8  
SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3)                    28   6.5  
SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)                   28   6.5  
SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)                   28   8.5  

>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1514

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 49  ENGRTLGQKGECTSGGHSTKVDSWWRWLFWHCSYCMCLC 165
           E    L   G   SG H++  D+ ++W   H  YC+  C
Sbjct: 153 EKDDPLQSLGTRPSGSHASLADAVYKWTLLHTGYCLLNC 191


>SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 49  ENGRTLGQKGECTSGGHSTKVDSWWRWLFWHCSYCMCLC 165
           E    L   G   SG H++  D+ ++W   H  YC+  C
Sbjct: 202 EKDDPLQSLGTRPSGSHASLADAVYKWTLLHTGYCLLNC 240


>SB_30249| Best HMM Match : Extensin_2 (HMM E-Value=0.035)
          Length = 624

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -3

Query: 233 LLLLTSEVASQRLKYLSESVASSHRHMQYEQCQNNQRHHESTLVL*PPLV 84
           +L++  EV+  R  YL +   S  + +   +C +++ HHE ++ L PPL+
Sbjct: 480 VLIIIGEVSVARTGYLRKP--SIKKGIPIRKCHDDRLHHELSMELLPPLM 527


>SB_50860| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 933

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 275 EYSSVFNNRSPVTTLLLLTSEVASQRLKYLSESVASSHR-HMQYEQCQNNQRHHESTL 105
           +Y    N+     +L   T + + Q   YL   + S HR H +YE   NN +H  S L
Sbjct: 370 KYEDAMNSFKNALSLFQKTGDESGQAKAYLG--MGSVHRSHGKYEDAMNNYQHAHSLL 425


>SB_16418| Best HMM Match : CXCXC (HMM E-Value=0.029)
          Length = 171

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 136 WHCSYCMCLCDDATDSDRYFSLWD 207
           W+ ++C C C D    DR   +WD
Sbjct: 139 WNSAHCRCECRDPKPCDRPLEVWD 162


>SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 464 RCQVQNAGCTSTLRDRSTPFNYTTGRLSPEKSQWISNDNTEGSAR-PRVKLELKNPDIPT 640
           R Q ++      LRDR    +  +GRL  ++ +W S     G +R P  + +    D+  
Sbjct: 145 RAQRESQYRQKVLRDRPCTAHRVSGRLCRQRKRWRSATEGMGPSRYPHPRSQRVREDVLQ 204

Query: 641 RXPVP 655
           R P P
Sbjct: 205 RRPRP 209


>SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3)
          Length = 866

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 578 NTEGSARPRVKLELKNPDIPTRXPVPLAVDSEHDQYVEFTNSD 706
           N E   R R+KL++   D PT  P    V+   D    F N+D
Sbjct: 40  NRERQRRRRIKLKMSRHDDPTMAPDASNVNMNLDNLEGFDNAD 82


>SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)
          Length = 691

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 303 SVCSRTLVDGILFRV**SQPCH 238
           S CSRT  DG+  RV    PCH
Sbjct: 335 STCSRTCGDGVRMRVRMHSPCH 356


>SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)
          Length = 256

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 46  YENGRTLGQKGECTSGGHSTKVDSWW 123
           YENG  LG K  C++G H+   D ++
Sbjct: 141 YENGVILGYKITCSAGNHTISKDLYF 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,193,223
Number of Sequences: 59808
Number of extensions: 433786
Number of successful extensions: 1370
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)