Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30529
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical ...    31   0.61 
AL034488-1|CAA22455.1|  625|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      30   1.9  
Z68879-1|CAA93081.1|  850|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    29   3.3  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    29   3.3  
U42832-1|AAV28357.1|  442|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine re...    29   4.3  
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   5.7  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   5.7  
U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family p...    27   9.9  

>AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical
           protein ZC190.8 protein.
          Length = 227

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 539 RLSPEKSQWISNDNTEGSAR-PRVK---LELKNPDIPTRXPVPLAVDSEHDQYVEFTNS 703
           RLSPE S+  SND    S R P VK    +  +P +P   PV L      +   EF NS
Sbjct: 54  RLSPESSKRNSNDQKARSVRDPSVKQISAQGNSPPLPKTPPVELLKPPPFELQKEFKNS 112


>AL034488-1|CAA22455.1|  625|Caenorhabditis elegans Hypothetical
           protein Y54G11A.1 protein.
          Length = 625

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 572 NDNTEGSARPRVKLELKNPDIPTRXP-VPLAVDSEHDQYVE 691
           ND+ +  ARP + +  K P++P   P VP A  +E  ++VE
Sbjct: 393 NDSAQVHARPILNMAAKLPELPVEYPSVPRAQPNEKLEFVE 433


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 130  LFWHCSYCMCLCDDATDSDRYFSLWDATSDVNNNKVVTGLRLLNTEEYSIYK 285
            L +H +    + D A ++D  FS      D+ N+   TG++L+    + +YK
Sbjct: 3233 LLYHRANIHSVLDQAENADYTFSAASQLVDLQNSVTTTGIKLMKNWGHHLYK 3284


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 130  LFWHCSYCMCLCDDATDSDRYFSLWDATSDVNNNKVVTGLRLLNTEEYSIYK 285
            L +H +    + D A ++D  FS      D+ N+   TG++L+    + +YK
Sbjct: 3244 LLYHRANIHSVLDQAENADYTFSAASQLVDLQNSVTTTGIKLMKNWGHHLYK 3295


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 130  LFWHCSYCMCLCDDATDSDRYFSLWDATSDVNNNKVVTGLRLLNTEEYSIYK 285
            L +H +    + D A ++D  FS      D+ N+   TG++L+    + +YK
Sbjct: 3244 LLYHRANIHSVLDQAENADYTFSAASQLVDLQNSVTTTGIKLMKNWGHHLYK 3295


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 130  LFWHCSYCMCLCDDATDSDRYFSLWDATSDVNNNKVVTGLRLLNTEEYSIYK 285
            L +H +    + D A ++D  FS      D+ N+   TG++L+    + +YK
Sbjct: 3244 LLYHRANIHSVLDQAENADYTFSAASQLVDLQNSVTTTGIKLMKNWGHHLYK 3295


>Z68879-1|CAA93081.1|  850|Caenorhabditis elegans Hypothetical
           protein K08F4.1 protein.
          Length = 850

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 437 RLALRTRPDRCQVQNAGCTSTLRDRSTPFNYTTGRLSPEKSQWIS 571
           RL+      R + Q A  +  L++  TP  Y   +  PE S W++
Sbjct: 223 RLSKLKEESRVKEQEAEFSRMLKETETPSEYENNKSHPESSLWVN 267


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 97  HSTKVDSWWRWLFWHCSYCMCL 162
           H+   D  WRW FW+ ++ +CL
Sbjct: 83  HAATADGKWRW-FWYTAFTICL 103


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 97  HSTKVDSWWRWLFWHCSYCMCL 162
           H+   D  WRW FW+ ++ +CL
Sbjct: 45  HAATADGKWRW-FWYTAFTICL 65


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -3

Query: 302 QCALVHL*MEYSSVFNNRSPVTTLL-LLTSEVASQRLKYLSESV----ASSHRHMQYEQC 138
           +CA+V     Y S+F  R  +  +  ++ SE A     Y SE V    ++  + MQ++Q 
Sbjct: 154 RCAIVDCNKRYKSMFALRVHMKIVHNVVVSEDAKSLTNYPSEDVKPNISALQQAMQHQQI 213

Query: 137 QNNQRHHE 114
           Q    HH+
Sbjct: 214 QQQHHHHQ 221


>U42832-1|AAV28357.1|  442|Caenorhabditis elegans Hypothetical
           protein F01E11.3 protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 637 GDVRILQFQFYPGPRGALGVVVADPLTLL 551
           G++  + F  Y G    LG VVAD LTLL
Sbjct: 37  GELTYIHFVTYAGTAPVLGEVVADDLTLL 65


>AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein99 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 389 IYAVFE-LRV*GIELLHWDPVASFDESPLLQCALVHL*MEYSSVFNNRSPVTTLLLLTSE 213
           IY +   L V  + +  W  +    E  L+ C+L+ L + Y  +F NRS   +       
Sbjct: 86  IYLILPMLGVFTVGVFSWLGIPIIVELILITCSLLSLALSYIYLFENRSRSVSQNRFKMS 145

Query: 212 VASQRLKYLS 183
             S R+KY S
Sbjct: 146 KKSSRIKYYS 155


>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 275 EYSSVFNNRSPVTTLLLLTSEVASQRLKYLSESVASSHRHMQYE 144
           +Y+  FNN SP+++++L  S  +S     ++ S  SS + +  +
Sbjct: 579 DYNKKFNNSSPLSSIILALSSSSSANKTEITPSKQSSEQEVSQQ 622


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 275 EYSSVFNNRSPVTTLLLLTSEVASQRLKYLSESVASSHRHMQYE 144
           +Y+  FNN SP+++++L  S  +S     ++ S  SS + +  +
Sbjct: 579 DYNKKFNNSSPLSSIILALSSSSSANKTEITPSKQSSEQEVSQQ 622


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 514  RSISKCRCAPSILNLTPVRTCPEG 443
            R   +CRC P    +T  + CPEG
Sbjct: 1396 RLTGQCRCLPGFTGMTCNQVCPEG 1419


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 514  RSISKCRCAPSILNLTPVRTCPEG 443
            R   +CRC P    +T  + CPEG
Sbjct: 1396 RLTGQCRCLPGFTGMTCNQVCPEG 1419


>U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family
           protein 35 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 355 SNFCTGTQSPPSMSPLSFSVLSYTCRWNT 269
           S FC  +   PS SP S S+  +T  WNT
Sbjct: 280 SIFCQQSFPTPSSSPYSDSLPHFTNEWNT 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,184,860
Number of Sequences: 27780
Number of extensions: 309434
Number of successful extensions: 926
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)