Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30529
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15780.1 68414.m01893 expressed protein                             33   0.14 
At4g14290.1 68417.m02202 expressed protein contains Interpro ent...    28   7.0  
At1g74160.1 68414.m08589 expressed protein                             28   7.0  
At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative / cel...    28   7.0  

>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = -1

Query: 490  APSILNLTPVRTCPEGESRSSKSMARFS 407
            +PS+L+  PV T  E E  SSK+MARF+
Sbjct: 1255 SPSLLDKLPVETSKENEDLSSKAMARFN 1282


>At4g14290.1 68417.m02202 expressed protein contains Interpro entry
           IPR000379
          Length = 534

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 518 PFNYTTGRLSPEKSQWISNDNTEGSARPRVKLELKNPDIPTRXPVPLAVDSEHDQYVEF 694
           P N  + + S E  +  S + +  S+   +  +L N D     P  LAV  + DQYVEF
Sbjct: 370 PSNDPSNQSSSETKEKESLEVSSSSSSDMISFDLSNGD---PYPPHLAVALDDDQYVEF 425


>At1g74160.1 68414.m08589 expressed protein
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 488 CTSTLRDRSTPFNYTTGRLSPEKSQWISNDNTEGSARPRVKLELKNPDIPTRXPVP 655
           CTS+   +S   N  +    P++    S   + GS  PR++ +    D  +R P P
Sbjct: 552 CTSSFDKKSDSRNVRSSSKKPQQVSKESASKSSGSVSPRLQQKKLEYDKRSRPPTP 607


>At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-1,4-beta-glucanase
           GI:2065530 from [Lycopersicon esculentum]
          Length = 623

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 273 FHLQV-YESTLKERGLIE-GGDWVPVQKFDPLDPQFKDGVDYHTLTYENRAIDLDDLDSP 446
           FH  + +  T+    LIE    +  + ++D +    K G DY  LT+ N A  LD + + 
Sbjct: 174 FHFPMAFSMTMLSWSLIEYSHKYKAIDEYDHMRDVLKWGTDYLLLTFNNSATRLDHIYTQ 233

Query: 447 SG 452
            G
Sbjct: 234 VG 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,736
Number of Sequences: 28952
Number of extensions: 294124
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)