Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30527
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686...    27   4.9  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    27   8.6  

>09_06_0235 -
           21763470-21764511,21767865-21768261,21768625-21768632,
           21769489-21769565
          Length = 507

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 117 PDATYITCS-RCIF*TNRFYCELC 185
           PDA  I  S R +  TNRF CE+C
Sbjct: 30  PDAEVIALSPRTLMATNRFVCEVC 53


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 117 PDATYITCS-RCIF*TNRFYCELC 185
           PDA  I  S + +  TNRF CE+C
Sbjct: 30  PDAEVIALSPKTLLATNRFVCEIC 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,045,299
Number of Sequences: 37544
Number of extensions: 123593
Number of successful extensions: 180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)