Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30527
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58605| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)           27   5.0  
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)                 27   6.6  

>SB_58605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
 Frame = -2

Query: 281 YKICHN*TSTAALDRTSLPTQEIKLNLYS---*KQTEFAVKSVSLEN--TS*ARNVRRVR 117
           Y+I H   ST  +   + PT E+ L L      K+ E AVK+  L+    S A+++++V+
Sbjct: 68  YRIRHIEVSTECVIEQTGPTNEVSLQLQQKLREKEDEIAVKNEQLKRMINSHAQSIKKVQ 127

Query: 116 QVYIARRKFA 87
            + I ++  A
Sbjct: 128 TLQIQKKTLA 137


>SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)
          Length = 898

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -3

Query: 139 HVMYVASGKFTLRAGSL-RAHIAHTIPSHLVIIQDPQSY 26
           HV+YV  GK  L A +L RA +   +P  ++++++ +SY
Sbjct: 316 HVVYVP-GKQQLTADALSRAPVGKPLPEDIMLVEEVESY 353


>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
          Length = 765

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -3

Query: 139 HVMYVASGKFTLRAGSL-RAHIAHTIPSHLVIIQDPQSY 26
           HV+YV  GK  L A +L RA +   +P  ++++++ +SY
Sbjct: 366 HVVYVP-GKQQLTADALSRAPVGKPLPEDVMLVEEVESY 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,793,394
Number of Sequences: 59808
Number of extensions: 159705
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)