Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30527
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ...    27   5.5  
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ...    27   7.2  
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ...    27   7.2  
At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to ...    26   9.6  

>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
           similar to zinc finger protein ID1 GB:AAC18941
           GI:3170601 from [Zea mays]  contains Pfam domain,
           PF00096: Zinc finger, C2H2 type
          Length = 467

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 117 PDATYITCS-RCIF*TNRFYCELC 185
           PDA  I  S + I  TNRF CE+C
Sbjct: 64  PDAEVIALSPKTIMATNRFLCEVC 87


>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 500

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 117 PDATYITCS-RCIF*TNRFYCELC 185
           PDA  I  S + +  TNRF CE+C
Sbjct: 43  PDAEVIALSPKTLMATNRFVCEIC 66


>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
           similar to potato PCP1 zinc finger protein, GenBank
           accession number X82328 contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 402

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 117 PDATYITCS-RCIF*TNRFYCELC 185
           PDA  I  S + +  TNRF CE+C
Sbjct: 64  PDAEVIALSPKTLLATNRFVCEIC 87


>At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to
           EXL3 (GP:15054386) [Arabidopsis thaliana]
          Length = 337

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 SLI*SPASVGTCDRVLQYLF 262
           S++ +P SVGTC+   +Y+F
Sbjct: 291 SILCNPKSVGTCNNATEYVF 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,651,716
Number of Sequences: 28952
Number of extensions: 104611
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)