Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30526
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.5  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   1.9  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    27   2.6  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   5.9  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   5.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.8  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 267 TGLHRPWCL 293
           TGLHRPWCL
Sbjct: 684 TGLHRPWCL 692


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 537 ALVHWQGLRPGXMGSVGGLWSGARQQTSM 451
           A+ +W G++P   G +GGL +G   QT +
Sbjct: 10  AIDYWNGVQPTVDGMLGGLGTGRIPQTDV 38


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 230 DAIAAGHAASVADRAPSTLVPGVSTNDDLSCQTSD 334
           DA+   HA  +  + PS++VP   T D  S QT +
Sbjct: 590 DAVQKSHAKKLQSK-PSSVVPNRITTDPFSSQTKE 623


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 191  SRSLIRSSHQRXPDAIAAGHAASVADRAPSTLVPGVSTNDDLSCQT 328
            S+ +I  S     +A  +  AA   +R    LV G +TN DL C+T
Sbjct: 864  SKKIIHESPLGDNEAAFSMTAAFFKNRDEFFLVAGSATNMDLECRT 909


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 176 TPGIWSRSLIRSSHQRXPDAIA-AGH--AASVADRAPSTLVPGVSTNDDLSCQT 328
           T G+WS  +  ++HQ   +A++ A H   A +A  +    V  +   DD SC T
Sbjct: 85  TGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCDT 138


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 330 PTAKKGSASTITCATRPITP*SLTEQTSSI*ESAVARVHRTST 458
           P     + +T TC++RP    S    TS++ ES  +    TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,844
Number of Sequences: 5004
Number of extensions: 43733
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)