Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30526
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1148 - 24363952-24365086,24365178-24365361,24365438-243654... 30 2.0
07_03_1582 + 27895744-27896985 29 3.5
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 3.5
09_04_0530 + 18365154-18365200,18365231-18365762,18365836-183659... 28 6.1
11_01_0803 - 7136331-7136347,7136596-7136731 28 8.0
07_01_0498 + 3734498-3734976,3736176-3736800 28 8.0
05_06_0231 - 26587900-26587980,26588291-26588356,26588452-265885... 28 8.0
05_01_0494 - 4120996-4121011,4121152-4121483,4122560-4122706,412... 28 8.0
04_04_0819 - 28312667-28313219,28315157-28316430 28 8.0
>07_03_1148 -
24363952-24365086,24365178-24365361,24365438-24365474,
24365585-24365818
Length = 529
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 200 LIRSSHQRXPDAIAAGHAASVADRAPSTLVPGVSTNDDLSCQTSDGXEGECVNYYLCNAA 379
L H A A G AA+V +A + + T+D+ C T D + NY +C
Sbjct: 15 LFSGLHPAASTAAAGGEAATVVVKAAAAVS---RTDDNFVCATLDWWPRDKCNYGMCPWY 71
Query: 380 NNTIIT-DGTNVI 415
N +II D N I
Sbjct: 72 NASIINLDLNNTI 84
>07_03_1582 + 27895744-27896985
Length = 413
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 526 LAGSPAGXDGICWRSLVGSQTADVDVR*TRATADSYIDDVCS 401
+AG P D + WR+L+G DV+ TA S ++ CS
Sbjct: 204 IAGMPMKPDAVVWRALLGGCRLHKDVK-MAETAISEMEATCS 244
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 586 VDGEXKFGEFPWMVAILKVEPVDDNEP 666
+DGE EFP+ + VE DD+EP
Sbjct: 1197 LDGEESLAEFPYASFLQTVETSDDSEP 1223
>09_04_0530 +
18365154-18365200,18365231-18365762,18365836-18365933,
18366026-18366271,18366615-18366729,18366844-18367057,
18367211-18367824
Length = 621
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -1
Query: 496 ICWRSLVGSQTADVDVR*TRATADSYIDDVCSVSDYGVIGRVAQVIVDALPFXAVGGLAR 317
+CWR + GS+ D D+ A D+ I D V + G A + D + + + R
Sbjct: 87 VCWRPVNGSECFDADI---IAAFDAAIHDGVDVLSVSLGGAPAGYLRDGVAIGSFHAVRR 143
Query: 316 KVIVRRDARHQG 281
V V A + G
Sbjct: 144 GVTVVCSAGNSG 155
>11_01_0803 - 7136331-7136347,7136596-7136731
Length = 50
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 346 PFXAVGGLARKVIVRRDARHQGRW 275
P A GG A K + RRD +GRW
Sbjct: 18 PSPAGGGAAAKGLERRDRERRGRW 41
>07_01_0498 + 3734498-3734976,3736176-3736800
Length = 367
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 412 DVCSVSDYGVIGRVAQVIVDALPFXAVGGLARKV 311
D +D GV+ +A +VD F A GG+ R V
Sbjct: 26 DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59
>05_06_0231 -
26587900-26587980,26588291-26588356,26588452-26588597,
26589182-26589374,26589465-26589515,26590165-26590311,
26590365-26590463,26590557-26590760,26590839-26590887,
26590979-26591074,26591367-26591457,26591753-26591823,
26592170-26592222,26592740-26592828,26593322-26593517,
26593975-26594088,26594217-26594291
Length = 606
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 197 IDSRSPVSMFCAHADARKPMSRSLYIFGYYSQNITLTISNXQCSS 63
+ R+ V + C+H D RKP R + I +S TL I + CSS
Sbjct: 380 VHDRAQVFVSCSHGDVRKP--RYVGIVERWSSK-TLQIPSLSCSS 421
>05_01_0494 -
4120996-4121011,4121152-4121483,4122560-4122706,
4122818-4122871,4123203-4123367,4125516-4125827,
4125992-4126078,4126202-4126411
Length = 440
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 591 VHVARGPEGNAVRVPPAAALVHWQGLRPGXMGSVGGLWSGARQQTSMYDEH 439
+ V R E + +R AAA G++P +G VGG + R TS EH
Sbjct: 156 IPVRRTTEADLLRASSAAAAGGRFGMKPRGVGVVGG--AARRDSTSSGHEH 204
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 111 ISKDVQASTHRLSRVGVRAEHGHRGSGVDH*SDLHISEXP 230
+ K+ +S+ RL + HGH G G H H+S P
Sbjct: 3 LHKEASSSSSRLDAAPLLPHHGHGGGGAGH----HLSSQP 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,013,090
Number of Sequences: 37544
Number of extensions: 367646
Number of successful extensions: 974
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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